Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq42 123 3e-23 seq447 105 8e-18 >seq42 Length=72740 Score = 123 bits (136), Expect = 3e-23 Identities = 320/485 (66%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || |||| ||||| || ||| ||| || ||||||| Sbjct 19618 ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACT 19677 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || || || || | | || ||||| || Sbjct 19678 GGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACT 19737 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| | Sbjct 19738 TGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCAA 19797 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 106691 | || || ||||| || ||| || | | | || || |||||| ||||| Sbjct 19798 GGATAGCGAACCACAGTTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGT 19857 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| | || ||||||| ||| || ||| | || || || |||| || Sbjct 19858 AGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCAAACAGGCCGGGGGCCTCGT 19917 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || || || ||||| | || ||| ||| || ||||||||||| ||||| |||| Sbjct 19918 TGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAAGAGGTCGGGAA 19977 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT- 106870 |||||||| | |||||||| | || ||| || | || ||||| || | Sbjct 19978 TCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTC 20036 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || ||| Sbjct 20037 AGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC 20096 Query 106931 TTTCG 106935 || || Sbjct 20097 TTGCG 20101 Score = 114 bits (126), Expect = 2e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 20331 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCC 20390 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 20391 TCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGTG 20450 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 20451 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAG 20510 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | ||||| |||||| ||||| | |||| Sbjct 20511 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 20570 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 107360 | |||||| || | || |||| |||| || |||||| || ||| |||| Sbjct 20571 TGCTGGGGTCGCTCTACGATCTTGCCGTCGACCC--TGAAGAGGTACGAGCGCTCGAGGG 20628 Query 107361 TTTTGAGACCAAAGTA 107376 | |||| |||||||| Sbjct 20629 TCTTGAAGCCAAAGTA 20644 >seq447 Length=587387 Score = 105 bits (116), Expect = 8e-18 Identities = 267/394 (68%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | ||| |||| ||||||| | |||| || | |||||| ||||| Sbjct 397604 GAGGAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 397545 Query 117156 GAGATTACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 ||| || ||| || | || | ||| | ||||||||||| || ||||| | Sbjct 397544 GAGGGC-CACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGA 397486 Query 117215 CGATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCC 117270 ||| || ||| | | |||| | ||| | || ||| || || | || ||| | Sbjct 397485 TGATCTGCTTGGGCACGT-CGGTCGAGGGCTTGTTTACGAGCATGGTGTAGAGGAGG--C 397429 Query 117271 ACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGG 117330 | ||| || || |||||| |||||||| ||| || | || || |||| ||| Sbjct 397428 A-GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 117331 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAG 117390 || |||||||| || |||||||| | ||| | || | |||||| |||||||||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 397310 Query 117391 ATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGA--CTTTGTG 117447 || ||||| || || || ||| |||||||||||||||| ||| | || || Sbjct 397309 ATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTG 397250 Query 117448 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 | | ||| ||||| ||||| | |||||||||| Sbjct 397249 TTGATCCACTTCATGGCCCAATCGGCCTTCTTCT 397216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969582990040