Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1445 87.8 1e-12 seq1223 87.8 1e-12 seq1307 82.4 6e-11 >seq1445 Length=562458 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | ||| | || |||| || | |||| Sbjct 28150 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 28091 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | ||||||||||| ||||| Sbjct 28090 TTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTC 28031 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | |||||||| || || || Sbjct 28030 TGCTTCACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTG 27971 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 27970 AGGGTCTTGACGAAGATCTGCAT 27948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | ||||||||| || || Sbjct 27911 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAA 27852 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||||||||||| ||||||||| || || Sbjct 27851 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTCACGTT 27792 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| ||||| | || || || || || |||| || || || Sbjct 27791 CTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 27732 Query 48755 AAAAATCTGCATCG-TGTGTACGTGTATGTCGAGCGCGCGTTGGT 48798 || |||||||| | || | | ||| ||| ||||| |||||| Sbjct 27731 GAAGATCTGCATTGTTGGCTGCTTGTGTGT--AGCGCTTGTTGGT 27689 >seq1223 Length=762 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | ||| | || |||| || | |||| Sbjct 291 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 350 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | ||||||||||| ||||| Sbjct 351 TTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTC 410 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | |||||||| || || || Sbjct 411 TGCTTCACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTG 470 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 471 AGGGTCTTGACGAAGATCTGCAT 493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | ||||||||| || || Sbjct 530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCGAA 589 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||||||||||| ||||||||| || || Sbjct 590 GATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTCACGTT 649 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| ||||| | || || || || || |||| || || || Sbjct 650 CTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 709 Query 48755 AAAAATCTGCATCG-TGTGTACGTGTATGTCGAGCGCGCGTTGGT 48798 || |||||||| | || | | ||| ||| ||||| |||||| Sbjct 710 GAAGATCTGCATTGTTGGCTGCTTGTGTGT--AGCGCTTGTTGGT 752 >seq1307 Length=263854 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | ||| | || |||| || | |||| Sbjct 170349 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGC 170408 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | || | |||||||||||| ||||| Sbjct 170409 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 170468 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | || ||||| || ||||| Sbjct 170469 TGCTTCACGTTTTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTG 170528 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 170529 AGGGTCTTGACGAAGATCTGCAT 170551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930538488283