Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq42 369 7e-97 seq447 244 2e-59 seq108 105 1e-17 >seq42 Length=72740 Score = 369 bits (408), Expect = 7e-97 Identities = 932/1396 (67%), Gaps = 81/1396 (6%) Strand=Plus/Plus Query 212585 GGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGC 212644 |||||| || ||||||||||||||||| |||||||||| |||| ||| | |||||| | Sbjct 18758 GGTGCGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGA 18817 Query 212645 TGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGG 212702 ||||| || ||| | | || |||| |||| ||||| ||| || Sbjct 18818 GGTGAGCTT----AGCGAACGAG---GG-----CTCG---CCCA--TGTAGACGTTGAGC 18860 Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 ||||| |||||||| ||| | | | | || ||||||||||| ||||| | | ||| Sbjct 18861 GACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGC 18920 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTC 212822 | ||||||||||||||||||| | | | |||| ||| || |||| | |||| | Sbjct 18921 GGGAGCTCCCACACGGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGC 18980 Query 212823 TGCACAGACCCCCTGTGTATGGTCAGCTGCAG-----GCGCATGTCCTCGTTCCAGAGGC 212877 || || || || |||| | |||| ||||| | || |||||||| Sbjct 18981 TGTACCGAGCCGTTGTGCGAGACGAGCTTGTTCTTGAGCGCAGG----CGA-CCAGAGGC 19035 Query 212878 CCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGC 212936 | | || ||| | | | | ||||| |||||| | |||||| || | ||| Sbjct 19036 CGCGCTGCTGCAG-CTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGG 19094 Query 212937 ACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATC 212996 | | | ||| | ||| | ||||||||||| | || ||||||||| ||||| ||| Sbjct 19095 ATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATC 19154 Query 212997 TGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCG 213056 || | || ||| ||||||||||| ||||| ||||| ||| | || ||||||| | Sbjct 19155 TGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGG 19214 Query 213057 CCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 ||||| ||||| || || ||||||||||| ||| | ||| | | || || Sbjct 19215 GCGATGTTGGCGCGGA-GCGTGGCCCAGTCCCACCTGTCCGACGG---CACG------AC 19264 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTA 213175 | ||| | ||| ||| | |||| ||| | |||| ||||| ||| | ||| Sbjct 19265 GCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTA 19324 Query 213176 GGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTC 213235 || ||| | ||| || |||||| || || |||||| |||||||||||||| || Sbjct 19325 GGTGCCCTCAACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTC 19384 Query 213236 AAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG------ACGTGAAGGGCATCATCAT 213289 || || | | |||||||| |||||| | ||| | | |||| ||||| Sbjct 19385 GAAGATGGCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCAT 19444 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | || || || ||||| ||||| || |||||||||||||| ||||| | || ||| Sbjct 19445 G------AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTT 19498 Query 213350 AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || ||| | ||| || |||||| ||||| |||||| | |||||||||||| Sbjct 19499 CGAGTTGCGGGCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 19558 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 |||| |||| || ||| | | ||| | || ||| | |||| || |||| Sbjct 19559 GGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTGGTCGAACTCG------CCGTTGGT 19612 Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTG 213528 | |||| ||||| |||| |||||||||||| ||||||||||| | | | | | | Sbjct 19613 GATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGAC-G 19671 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 |||||| | || ||| ||||||||||| | |||||||||| |||| ||| |||| Sbjct 19672 TGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGT 19731 Query 213589 TTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 | ||||| ||||| | |||||||| ||||||||||| | |||||||| | ||| | Sbjct 19732 TGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCG 19791 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGGGC 213707 || | || || | ||| || | | |||||||||||| || | || | ||| | Sbjct 19792 ACTCAAGGATAGCGAACCACAGTTCCTGGGCCTTGACCACGCGGC-----GCGCGCGGCC 19846 Query 213708 GT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC---CAG 213763 | |||||| | ||||| ||| | ||| || | |||||| | ||| ||| Sbjct 19847 CTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCA---CGAGTCAAACAG 19903 Query 213764 TCC--CGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTG 213820 || || | | | ||| || | ||| |||||| ||| | |||| || | || Sbjct 19904 GCCGGGGGCCTCGTT--GGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTC-CACGCGCTT 19960 Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| ||||| || | |||||| || ||| || || | || | |||| ||| Sbjct 19961 CATGAAGAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTT 20020 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| || ||| || || ||||||||||||||||||||||| ||||| | ||| Sbjct 20021 GCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTA 20080 Query 213941 GATGGCAAAGGCGCCC 213956 |||||| || || ||| Sbjct 20081 GATGGCGAAAGCACCC 20096 Score = 129 bits (142), Expect = 1e-24 Identities = 282/417 (68%), Gaps = 4/417 (1%) Strand=Plus/Plus Query 213995 GTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATA 214054 |||| ||| ||| || | ||| | || |||||||| |||||||| || || || Sbjct 20237 GTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCGCGGATGTA 20296 Query 214055 CGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGAT 214114 |||| |||||| | | | | | || ||| || ||||| ||||| |||||||||| Sbjct 20297 CGAGTTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCGACTTGGAGAT 20356 Query 214115 CATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAG 214174 | ||| || || | | || || |||||| | || ||| || | | | | || Sbjct 20357 GAGGGCACACTGCTTGAGGGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGAG 20416 Query 214175 CAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGC 214234 | |||||| ||| ||||| || | | | ||| | |||||| ||||| ||| |||| Sbjct 20417 GAGGAAGCACGACGACAGCTGCGGGCGCGGGGTGCCGGCGTTGAAGAGCGTCGGGGTGGC 20476 Query 214235 ATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTG 214294 ||| | | | || | || | ||| ||||||||| | || | |||||||| || Sbjct 20477 GTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAGGTCTCGATCACGGCGGGGATGTTGTC 20536 Query 214295 CTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT- 214352 |||||| | | || ||| | ||| |||||||||||||| | ||||| | || | Sbjct 20537 CTTGTGCAGGCCGACGGC-CACGCGCATGAGCATGTGCTGGGGTCGCTCTA-CGATCTTG 20594 Query 214353 TTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 | | || ||| ||||| |||||||| || |||||||| |||||||||| |||| Sbjct 20595 CCGTCGACCCTGAAGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGGTGTAG 20651 >seq447 Length=587387 Score = 244 bits (270), Expect = 2e-59 Identities = 505/745 (68%), Gaps = 26/745 (3%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 || ||| | || || ||| |||||||||| | |||||||| | ||||||||| ||| Sbjct 397603 AGGAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGATG 397544 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 |||| |||||||| | || || | || |||||||| |||| ||||| || | Sbjct 397543 AGGGCCACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGATG 397484 Query 48074 ATCTGCTTA---ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATG 48130 |||||||| ||| || | ||||| ||||| | | || ||| ||||| | | Sbjct 397483 ATCTGCTTGGGCACGTCGGTC---GAGGGCTTGTTT---ACGAGCATGGTGTAGAGGAGG 397430 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| ||||| | ||| | ||| || || |||||||| | | |||| |||| ||| Sbjct 397429 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || ||||||||||| || | ||| ||| ||||||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 397310 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG------AAGCGTTCTTG 48304 |||||||| || || ||||| | |||| | ||| |||| | | | | |||| Sbjct 397309 ATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTG 397250 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 | |||||| | ||||| || ||||||||||||| | |||| ||||| ||| Sbjct 397249 T---TGATCCACTTCATGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATG 397193 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTT 48421 || |||||||| | | ||| | |||| || ||||| |||| ||| Sbjct 397192 GCGCGGAAGAGGTGGTCCTTCTCGATGGGGTCCTTGACGTAGGTGTCGATGAGGAGC--- 397136 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||||||||| ||||| | ||||| || ||||| ||||| ||||||||| | ||| Sbjct 397135 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCC 397076 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 || ||||||||| || | ||| | || || |||||||| || || || || Sbjct 397075 TCGGGCACCTGCACCTCCTTCATGAAGC-GGCCGGCGAGATTCTCGGCCACGATGCCGTC 397017 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || |||||||| ||||| || || | ||| || | ||||| || | |||| | Sbjct 397016 GCTGGCGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGA 396957 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 | |||| || | ||| || ||| || ||||| || | ||||||||||| || Sbjct 396956 TTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTC 396897 Query 48661 TGCTTTTTTGTACATGCCCCATATG 48685 || || |||||||| |||| ||| Sbjct 396896 GGCCTTCTTGTACATCTCCCAGATG 396872 >seq108 Length=164275 Score = 105 bits (116), Expect = 1e-17 Identities = 152/213 (71%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 |||||||| || ||||||||| ||||||||||| || || ||||||| || | || Sbjct 12166 CCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGCCAGGCCGGGCATGAGGCCGCGCTTC 12225 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 ||||||||||| || | | | |||| ||||||||||||||||| || || ||||| Sbjct 12226 TTGAGCCAGAAGAT---GGAGCAGGAGCTCGAGAAGAAGATGCCCTCGACGGCGGCGAAT 12282 Query 48272 GCGGTGAGCCTCTCTCCGAAAG-----AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCC 48326 || || | || || || | | || ||| | | |||||| ||||||| Sbjct 12283 CCGACCAGGCGCTGACCAAAGGTCTCTACGCCTTC--GGTGGCGATCCACTTGAGCGCCC 12340 Query 48327 AGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 |||| |||||||||||||| | || || |||| Sbjct 12341 AGTCGGCCTTCTTCTTGATCGACGGGATGGTCT 12373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931515089232640