Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq447 206 5e-48 seq42 179 7e-40 seq108 96.9 6e-15 >seq447 Length=587387 Score = 206 bits (228), Expect = 5e-48 Identities = 395/576 (69%), Gaps = 17/576 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 396873 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 396932 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | |||||| | |||| | | || ||| |||||| ||| || ||||| || Sbjct 396933 AGCTCCGACATGAAGCACTGGGAATCGCTCAGCAACGACGAGAGGCACTTCATCAAGCAC 396992 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| ||||| || ||| || || || ||| ||||||||| || | ||| Sbjct 396993 GTCCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCTTC 397052 Query 25657 ACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 | | ||| |||||| ||| ||||| || |||||||| ||||| || |||||| Sbjct 397053 ATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAAATCGCCATC 397109 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| | ||| || || || ||| | | ||| | Sbjct 397110 GAGAACATCCACTCCGAGATGTA---CTCGCTCCTCATCGACACCTACGTCAAGGACCCC 397166 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| || | || || | ||||||||| | | ||| |||||| |||||| Sbjct 397167 ATCGAGAAGGACCACCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGGCC 397226 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGGTA 25887 |||||||||||||||||||||| || | || || || | |||||| || | Sbjct 397227 GATTGGGCCATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCGAGCGCCTCATT 397286 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCT 25946 | || || || || ||||||||||| ||| ||| | | ||| ||||||||||||| Sbjct 397287 GGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGGCT 397345 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || ||||||||| || ||| |||||| | |||||| | || || Sbjct 397346 CAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGA 397405 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| |||||| | || || |||||||| |||||||| Sbjct 397406 GGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 397441 >seq42 Length=72740 Score = 179 bits (198), Expect = 7e-40 Identities = 457/686 (67%), Gaps = 51/686 (7%) Strand=Plus/Plus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGA--AG 221561 |||||||||||||| ||||| |||||||| |||||||||||||| | | |||| || | Sbjct 19446 AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTG 19505 Query 221562 CGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGA 221621 ||| || || |||||||| || |||||| |||||||| |||||||||||| |||| Sbjct 19506 CGG--GCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGA 19563 Query 221622 TGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 || || || || ||| |||||||| ||| | | ||||||||| | ||| Sbjct 19564 CCACCTTCACGACGTCGTGCAGCTTCTTGTGGT------CGAACTCGCCG--TTGGTGAT 19615 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || | |||| | || | ||||||||| ||||||||||||||||| Sbjct 19616 GAACTTGGGC---AGCG---CGAGCGA----GGCCAGGTTGCACACGGCCACCTCGTCGG 19665 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || ||||| | || ||| || || ||||| ||| |||||| || ||||| | Sbjct 19666 GCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCT 19725 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 || || ||||||| ||| ||||||||||| ||||| |||| ||| ||||| | Sbjct 19726 GCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGA 19785 Query 221862 GCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC 221921 ||| | | | || || | ||| ||||| |||| || | || | | || | Sbjct 19786 TCTGCGACTCAAGGATAGCGAACCACAGTTC-CTGGGCCT---TGACCAC---GCGGCGC 19838 Query 221922 CCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTC-- 221979 | ||| | || | | || ||| || || |||| || || || ||| | | Sbjct 19839 GCGCGGCC--CTCCTGCTCG---TAGCGC---TCGTACTTCTCCTCGAACTCCTTGCCCC 19890 Query 221980 ----------CAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT-GCTTGTTGTCT 222028 |||||| || | | ||| || | || ||||| || ||| Sbjct 19891 ACGAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTC- 19949 Query 222029 TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGC 222088 | || | || |||||||||||| || |||||||| | | |||||||| | || || Sbjct 19950 TCCACGCGCTTCATGAAGAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGG 20009 Query 222089 TGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCAC 222148 | ||||||| ||||| ||| ||| |||| || | || ||||| ||||| |||||||| Sbjct 20010 TTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAG 20069 Query 222149 GGCTCCAGATAGACGGCCAGAGCGCC 222174 ||||| || |||| ||| | ||| || Sbjct 20070 GGCTCGAGGTAGATGGCGAAAGCACC 20095 Score = 105 bits (116), Expect = 1e-17 Identities = 228/334 (68%), Gaps = 8/334 (2%) Strand=Plus/Plus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | ||| || |||||| ||||| |||||| Sbjct 20330 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCC 20389 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | || || || || ||||||| ||| | | || Sbjct 20390 CTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGT 20449 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 20450 GCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGTGACAAGAGGTCGT 20508 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | | ||| | |||| || Sbjct 20509 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCA 20568 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || |||||||| || | Sbjct 20569 TGTGCTGGGGTCGCTCTAC-GATCTTGCCGTCGACCCTGA-AG-AGGTACGAGCGCTCGA 20625 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| ||||||||| || || ||||| Sbjct 20626 GGGTCTTGAAGCCAAAGTAGGTGTAGTTGAAGTC 20659 >seq108 Length=164275 Score = 96.9 bits (106), Expect = 6e-15 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT---ACGTTT 25872 ||||||| |||||| ||||| | ||||||||| || | | ||| || ||| Sbjct 12359 ATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCGCCACCGAAGGCGTAGAGACCTTT 12300 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||| ||||| | || || || || ||||||||||| ||| | || | || Sbjct 12299 GGTCAGCGCCTGGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCGAGCTCCT--GCT 12242 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||||||| || || ||||||||| ||| ||| |||||||||||| Sbjct 12241 -CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTCTCCAACGAGCTC 12183 Query 25993 ATCAGCAGGGACGAGGGT 26010 ||||| | ||||| ||| Sbjct 12182 ATCAGTCGCGACGAAGGT 12165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928827140338240