Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1307 89.7 3e-12 seq1445 87.8 1e-11 seq1223 87.8 1e-11 >seq1307 Length=263854 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| ||| || || | || || || || || || Sbjct 170558 ACGAAGACGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 170617 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 170618 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACC 170677 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| || || || || || || || || || || Sbjct 170678 CTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAG 170737 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| || ||||| ||||| || || Sbjct 170738 GGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTG 170776 >seq1445 Length=562458 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| || || || | || || || || || || Sbjct 27941 ACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 27882 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 27881 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACC 27822 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 |||||||| ||||||||||| || || || || || || | | | | || | Sbjct 27821 CTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGA-CCTCGA 27763 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| || ||||| ||||| || || Sbjct 27762 GGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG 27723 >seq1223 Length=762 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| || || || | || || || || || || Sbjct 500 ACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 559 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 560 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACC 619 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 |||||||| ||||||||||| || || || || || || | | | | || | Sbjct 620 CTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGA-CCTCGA 678 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| || ||||| ||||| || || Sbjct 679 GGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268113956930108