Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq447 105 8e-18 seq42 105 8e-18 >seq447 Length=587387 Score = 105 bits (116), Expect = 8e-18 Identities = 267/394 (68%), Gaps = 13/394 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG--TCTCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || | ||| ||||||||| Sbjct 397216 AGAAGAAGGCCGATTGGGCCATGAAGTGGATCAACAAGGAGGGTGTCGAGACCTTCGCCG 397275 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 ||||||| ||| || || || ||||| |||||||||||||| |||||| | | Sbjct 397276 AGCGCCTCATTGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 397335 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 397336 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 397395 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 397396 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTAA 397452 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 397453 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAGATTGAGAAG 397511 Query 65314 GGGTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTC 65372 | ||| | || | || ||| || |||||||| |||||| | || |||| Sbjct 397512 GAATTCGTGACCGAGTCGCTGCCCGTG-GCCCTCATCGGCATGAACGCCGACCTCATGTG 397570 Query 65373 CGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | ||||||| |||| ||| | || || |||||| Sbjct 397571 CCAGTACATCGAGTTCGTGGCCGACCGCCTCCTC 397604 >seq42 Length=72740 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| || |||||| || |||| |||| || Sbjct 20644 TACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCTTCA--GGGTCGACGGCAAGATCG 20587 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 20586 TAGAGCGACCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCC 20527 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 20526 CCGCCGTGATCGAGACCTACGACCTCTTGTCACAGCAGCTCTTCACCCACGCCACCCCGA 20467 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 20466 CGCTCTTCAACGCCGGCACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTCACCATGA 20407 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | ||||||| | ||||| |||| Sbjct 20406 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGTGCCCTCATCTCCAAGT 20347 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 20346 CGGCCGGCGGCATCGG 20331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558257720480