Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq453 109 2e-18 >seq453 Length=250894 Score = 109 bits (120), Expect = 2e-18 Identities = 183/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 141757 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 141816 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGCGAATC 302738 | ||| || || | | | ||| |||| ||||| ||||||| || ||||| || Sbjct 141817 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCACGCGACTCCGGGCCAA-A 141875 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| ||| |||||| ||||| || | || ||| | | ||||| ||||| || Sbjct 141876 GTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGCC 141935 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || ||| | | ||| Sbjct 141936 CTCGACGTTCTGCTGACCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCC 141993 Query 302857 TTGGAGCCAGCATTTACCAT 302876 ||||| || ||| | ||||| Sbjct 141994 TTGGACCCGGCAATCACCAT 142013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471788917494577