Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1307 89.7 4e-13 seq932 89.7 4e-13 seq753 89.7 4e-13 seq638 86.0 5e-12 seq1445 82.4 6e-11 seq1223 82.4 6e-11 >seq1307 Length=263854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || |||| ||||| ||||| ||| |||| ||| | || Sbjct 170779 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 170720 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || |||||| || || || || | ||| |||||| Sbjct 170719 GACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 170660 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| || | || ||||||||| Sbjct 170659 CAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCGCCGACTACAAC 170600 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 170599 ATCCAGAAGGAGTCTAC 170583 >seq932 Length=1165899 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || || ||| |||| ||| | || Sbjct 390583 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACTATCACCCTCGAGGTCGAGTCCAGC 390524 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || |||||| || || || ||| | || |||||| Sbjct 390523 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 390464 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 390463 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 390404 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 390403 ATCCAGAAGGAGTCCACGCTCCAC 390380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 391268 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 391209 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||||| || || |||||| | || || || Sbjct 391208 CGACACCATCGAGAACGTTAAGCAAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 391149 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 391148 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCCGACTACAA 391089 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||| || || | ||| | ||| Sbjct 391088 CATCCAGAAGGAATCGACTCTCCACCTCGTG 391058 >seq753 Length=48462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 14211 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 14152 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || |||| | || | || || || Sbjct 14151 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGACGATGAGGAGCGTCATGTTGG 14093 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 14092 CGATCTCGGCAACGTC 14077 >seq638 Length=1393837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 263254 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 263195 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || |||||| || || |||||| | || || || Sbjct 263194 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCCGACCA 263135 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | || || || ||||| ||||||| | || | || |||||||| Sbjct 263134 GCAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 263075 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 263074 CATCCAGAAGGAGTCCACGCTCCAC 263050 >seq1445 Length=562458 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 27719 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 27778 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||||| || || || || | ||| ||||| Sbjct 27779 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 27838 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| || | || |||||||| Sbjct 27839 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCGCCGACTACAA 27898 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 27899 CATCCAGAAGGAGTCGAC 27916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | | | || || ||||| ||| |||| ||| | || Sbjct 28176 ATGCAGATCTTCGTCAAGACCTCA-CGGGTAAGACCATCACCCTCGAGGTCGAGTCCAGC 28234 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || || | ||| |||||| Sbjct 28235 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 28294 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 28295 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 28354 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| | ||| | ||| Sbjct 28355 ATCCAGAAGGAGTCCACGCTCCACCTCGTG 28384 >seq1223 Length=762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | | | || || ||||| ||| |||| ||| | || Sbjct 265 ATGCAGATCTTCGTCAAGACCTCA-CGGGTAAGACCATCACCCTCGAGGTCGAGTCCAGC 207 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || || | ||| |||||| Sbjct 206 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 147 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 146 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 87 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| | ||| | ||| Sbjct 86 ATCCAGAAGGAGTCCACGCTCCACCTCGTG 57 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 722 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 663 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||||| || || || || | ||| ||||| Sbjct 662 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 603 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| || | || |||||||| Sbjct 602 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTCGCCGACTACAA 543 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 542 CATCCAGAAGGAGTCGAC 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869405945969