Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1224 93.3 3e-14 seq1445 86.0 5e-12 seq1223 86.0 5e-12 seq1307 84.2 2e-11 seq422 84.2 2e-11 >seq1224 Length=756 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || || | ||| || Sbjct 585 CGGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCG 526 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 525 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTG 466 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||||| | || | ||||| || || || || || || || Sbjct 465 TCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 406 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| | ||| || || || ||||||||| Sbjct 405 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 370 >seq1445 Length=562458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || || ||||| || || || | ||||||| Sbjct 27935 ACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 27876 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || ||||| | || | | |||||||| || ||||||||||| || Sbjct 27875 GTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTT 27816 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||||| || || | || | ||||| || || || || || || Sbjct 27815 GTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGAT 27756 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| || || || ||||||||| Sbjct 27755 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 27719 >seq1223 Length=762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || || ||||| || || || | ||||||| Sbjct 506 ACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 565 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || ||||| | || | | |||||||| || ||||||||||| || Sbjct 566 GTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTT 625 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||||| || || | || | ||||| || || || || || || Sbjct 626 GTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGAT 685 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| || || || ||||||||| Sbjct 686 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 722 >seq1307 Length=263854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || || ||||| || || || | ||||||| Sbjct 170564 ACGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 170623 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || ||||| | || | | |||||||| || ||||||||||| || Sbjct 170624 GTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTT 170683 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || || | || | ||||| || || || || || || Sbjct 170684 GTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGAT 170743 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||| ||| || || || |||||||| Sbjct 170744 GGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 170779 >seq422 Length=916903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || |||||||| || || || ||||| || || || | ||| || Sbjct 624985 ACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCC 624926 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || || || | || | | ||||| || || |||||||||||||| Sbjct 624925 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCTTT 624866 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||||| | || | ||||| ||||| || || || || Sbjct 624865 GTCCTGAATCTTCTGCTTGACGTTCTCGATCGTGTCGCTGGACTCTACCTCGAGGGTGAT 624806 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | || || || || |||||||| Sbjct 624805 AGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 624770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212059119461