Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq666 113 3e-19 seq496 107 1e-17 seq1273 93.3 3e-13 seq1182 91.5 1e-12 seq990 91.5 1e-12 seq618 91.5 1e-12 seq615 91.5 1e-12 seq171 89.7 4e-12 seq1365 87.8 1e-11 >seq666 Length=190869 Score = 113 bits (124), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1047957 ATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTG 1048016 || || || || ||||| || || || || || || |||||| |||||||||| || ||| Sbjct 182914 ATCTCGGGTGCGGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCGTTCTCCTCCTTG 182855 Query 1048017 ATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTT 1048076 ||||| || || || |||||||| | || |||||||| || ||||| | || | ||| Sbjct 182854 ATGCGCGCGAACCCGAAATCGGCCACCTTCACATTCCAGTTCTCATCCACCAGCAGATTG 182795 Query 1048077 GATGGCTTAATGTCACGATGAATAATC 1048103 |||||||| | || |||||||||||| Sbjct 182794 GATGGCTTGAGATCGCGATGAATAATC 182768 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 1061536 ACTTCCCACATAACAATTCCAAAAGAGAATACATCTACTTTCTCTGTATATTTTTCTCCA 1061595 || |||||||| | || || || ||| | || || | ||| | || || || || Sbjct 182980 ACCTCCCACATGATGATGCCGAACGAGTAAACGTCCGCGGACTCAGAGTACTTCTCGCCG 182921 Query 1061596 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTTCCACAACGTGTCATTACGGAATTTTCC 1061655 || | || || || || ||||| || || || || || || ||||| || || ||| Sbjct 182920 CGGAGTATCTCGGGTGCGGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCGTTCTCC 182861 Query 1061656 TCTTTGATACGTGCAAATCCAAAATCAGCAATTTTCACATTCATACTATCATCAACTAGA 1061715 || ||||| || || || || ||||| || | ||||||||| | ||||| || || Sbjct 182860 TCCTTGATGCGCGCGAACCCGAAATCGGCCACCTTCACATTCCAGTTCTCATCCACCAGC 182801 Query 1061716 ATATTGGATGGTTTAATGTCACGATGAATAATAATTgg 1061753 | ||||||||| || | || ||||||||||| || || Sbjct 182800 AGATTGGATGGCTTGAGATCGCGATGAATAATCATCGG 182763 >seq496 Length=104993 Score = 107 bits (118), Expect = 1e-17 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 1039931 ACCTTGACATTCCATTTTGAATCCAAAAGCAAATTAAGCGACTTCAAATCTCGATGAACA 1039990 |||||||||||||| || | || | |||| || |||||||| | || || || || Sbjct 88288 ACCTTGACATTCCACTTGGCGTCGAGGAGCAGGTTGAGCGACTTGAGGTCGCGGTGCACG 88229 Query 1039991 ATACCTGATGAATGAAGAAAATGCATACCTTTTGAAGCCTGATAAGCCATCTTAATTTTA 1040050 || || || || || || || ||||| || || | ||||| || |||||||| | || Sbjct 88228 ATGCCCGACGAGTGGAGGAAGTGCATGCCCTTGGCCGCCTGGTAGGCCATCTTGAACTTG 88169 Query 1040051 AGAGCATAAGGAATTTCTGGAATAAGTTCGTTACCAAGAAGATCGTAAAGAGATCCAAGA 1040110 || | | ||||| || || || || ||||| || || ||||| || || || || Sbjct 88168 AGGCCGTGGGGAATGTCCGGTATGAGCTCGTTCTGGAGCAGGTCGTAGAGCGACCCGAGC 88109 Query 1040111 GACATAAACTCCATCACAATACACATATTTGGTGATTTTGTACTAGCAGCCATAAACAAA 1040170 | ||| ||||||||||| || |||| | || | | || | || ||||| || | Sbjct 88108 GCCATGAACTCCATCACGATGCACAGACGCGGCGGTCGCGTGCAGGCGGCCATGAAGAGG 88049 Query 1040171 ACCACATTGGGATGACGTAGAC 1040192 ||||| ||||| || || |||| Sbjct 88048 ACCACGTTGGGGTGCCGCAGAC 88027 Score = 100 bits (110), Expect = 2e-15 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || |||||||||||||| || || || || || | |||||||| || || || | Sbjct 88288 ACCTTGACATTCCACTTGGCGTCGAGGAGCAGGTTGAGCGACTTGAGGTCGCGGTGCACG 88229 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || || || || | ||| ||||| ||||| | || || || || || |||| ||| Sbjct 88228 ATGCCCGACGAGTGGAGGAAGTGCATGCCCTTGGCCGCCTGGTAGGCCATCTTGAACTTG 88169 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACAAATCATGCAATGAGCCAAGA 1050059 || | || || || || ||||| ||||| | | || || | | || || || Sbjct 88168 AGGCCGTGGGGAATGTCCGGTATGAGCTCGTTCTGGAGCAGGTCGTAGAGCGACCCGAGC 88109 Query 1050060 GCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCCATGAAAAGA 1050119 |||||||| ||||| || ||||||| || ||| || | || |||||||| || Sbjct 88108 GCCATGAACTCCATCACGATGCACAGACGCGGCGGTCGCGTGCAGGCGGCCATGAAGAGG 88049 Query 1050120 ACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCTCATCC 1050164 || ||||| || || |||| | |||| |||| ||||| ||| Sbjct 88048 ACCACGTTGGGGTGCCGCAGACGGCTCATGACTCGCACCTCGTCC 88004 >seq1273 Length=5398 Score = 93.3 bits (102), Expect = 3e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1047885 GTCAATACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATA 1047944 |||| || |||||||| | | || || || || |||||| || || || || | Sbjct 585 GTCAGCACCTCCCACATGATCACGCCGAACGAGAACACATCGGCCCGCTCATCGTACTTC 644 Query 1047945 TCATTACGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCG 1048004 || || || || || || || |||||||| || || || || |||||||| | ||| Sbjct 645 TCGCCGCGGATGATCTCCGGCGCCGTCCAACAGGGCGTGCCGCATCGAGTCATCGTCGCG 704 Query 1048005 TTCTCTTCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATC 1048063 ||||| || ||||| || ||||| ||||| ||||| | || ||||||||||| || || Sbjct 705 TTCTCCTCCTTGATCCGCGCAAACCCAAAGTCGGCCACCTTCACATTCCAATTCTCGTC 763 >seq1182 Length=1895500 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || || || || || || |||||| ||||||||||||| |||||||| || || Sbjct 1215143 GTCCAGCAGGGGGTGCCGCAGCGGGTCATGGTGGCGTTCTCTTCCTTGATGCGCGCGAAC 1215202 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTTAATG 1048088 || || ||||| | || || ||||| || || |||| ||| | ||| || ||||| | | Sbjct 1215203 CCGAAGTCGGCCACCTTCACGTTCCAGTTCTCGTCGACGAGCAGATTGGAGGGCTTGAGG 1215262 Query 1048089 TCACGATG 1048096 || || || Sbjct 1215263 TCGCGGTG 1215270 >seq990 Length=1179915 Score = 91.5 bits (100), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 |||||||| | |||||| ||||| || |||||||| ||||| || || || || || ||| Sbjct 307834 GAGCCAAGGGTCATGAACTCCATGACGATGCACATCTTGGGCGGCTTGGTGGAGGCGGCC 307775 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCTCATCCTTGAAA 1050170 ||||| || || ||||| || || |||| | ||||| || | ||||| |||||||| Sbjct 307774 ATGAAGAGGACCACGTTGGGGTGCCGCAGCGCGGTCATGACGCGCACCTCGTCCTTGAAG 307715 Query 1050171 TTTCTTTCAATATCTTTGGTGATGGTTTTATCTGGCGATATCATCTTGACAGCAACTTCA 1050230 || | || || || || | | || | | | ||||||||||| || || || Sbjct 307714 TTGCGCTCCATGTCGCGCGTCACG---TTGGCCGAGGTCATCATCTTGACCGCCACCTCG 307658 Query 1050231 GTACCTCTCCA 1050241 || || |||| Sbjct 307657 GTGCCCTTCCA 307647 Score = 91.5 bits (100), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 ||||| || |||||||| ||||| || |||||||| ||||| || || || || || ||| Sbjct 328125 GAGCCGAGGGCCATGAACTCCATGACGATGCACATCTTGGGCGGCTTGGTGGAGGCGGCC 328184 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCTCATCCTTGAAA 1050170 ||||| || || ||||| || || |||| | ||||| || | ||||| |||||||| Sbjct 328185 ATGAAGAGGACCACGTTGGGGTGCCGCAGCGCGGTCATGACGCGCACCTCGTCCTTGAAG 328244 Query 1050171 TTTCTTTCAATATCTTTGGTGATGGTTTTATCTGGCGATATCATCTTGACAGCAACTTCA 1050230 || | || || || || | | || | | | ||||||||||| || || || Sbjct 328245 TTGCGCTCCATGTCGCGCGTCACG---TTGGCCGAGGTCATCATCTTGACCGCCACCTCG 328301 Query 1050231 GTACCTCTCCA 1050241 || || |||| Sbjct 328302 GTGCCCTTCCA 328312 >seq618 Length=7599 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 1049877 CTAACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGA 1049936 || || ||||| |||||||| ||| || || ||||| | |||||||||||||||||| Sbjct 6480 CTTACCTTGACGTTCCACTTGGAATCCAGCAGAAGATTGAGGGACTTGAGATCACGATGA 6539 Query 1049937 GTGATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGA-C 1049995 ||| ||||| || ||||| || ||||| ||||| || || || || || | |||| | Sbjct 6540 ACGATGCCTGACGAGTGCAAAAAGTGCATGCCCTTGGAGGCCTGGTAGGCCACCTTGACC 6599 Query 1049996 TTTGAGA 1050002 |||| || Sbjct 6600 TTTGGGA 6606 >seq615 Length=307551 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| || || || || || | |||||||| || ||||| | Sbjct 134084 ACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGGTCGCGATGCACG 134143 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || |||||||||||||||||||| ||||| || ||||| || || | ||||| || Sbjct 134144 ATGCCGGAGGAATGCAAGAAATGCATGCCCTTGGAGGCTTGGTAGGCGACCTTGACCTTC 134203 Query 1050000 AGAGC 1050004 ||||| Sbjct 134204 AGAGC 134208 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 ||||| ||||||||| | ||||| | || ||||| ||||||||||| || || || ||| Sbjct 301686 GAGCCGAGAGCCATGTACTCCATGATGATACACATCTTGGGTGGTTTGGTGGAGGCGGCC 301745 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCT 1050159 ||||| || || ||||| ||||| ||||| | ||||| || | |||| Sbjct 301746 ATGAACAGGACCACGTTCGGATGCCGCAACGCCGTCATCACGCGCACCT 301794 >seq171 Length=649206 Score = 89.7 bits (98), Expect = 4e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 1050155 GACCTCATCCTTGAAATTTCTTTCAATATCTTTGGTGATGGTTTTATCTGGCGATATCAT 1050214 ||||||||||||||| | ||||| | || || ||||| || || | || | ||| Sbjct 500937 GACCTCATCCTTGAAGCTCCTTTCGAGGTCCTTCGTGATC---TTGTCCGACGTCAGCAT 500881 Query 1050215 CTTGACAGCAACTTCAGTACCTCTCCAGGTTCCTTTATGAACTTCACCAAAAGCTCCAGT 1050274 ||||||||||||||| || ||| |||| ||| | || || ||| || | ||||| Sbjct 500880 CTTGACAGCAACTTCGGTGCCTTTCCACGTTGCGCGGTGCACCGAACCGAAGCCGCCAGT 500821 Query 1050275 ACCAAGTTGTTCTCCAAGTTCCAATTCGTGGAAATCAATTTCCCAGTC 1050322 || || ||||| || ||||| | ||| |||||| || |||||||| Sbjct 500820 GCCCAGGTGTTCGCCGAGTTCGAGCTCGCCGAAATCGATCTCCCAGTC 500773 >seq1365 Length=922901 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1050052 AGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCCA 1050111 |||| ||||||||| | ||||| || |||||||||||||| | || || || || |||| Sbjct 360448 AGCCGAGAGCCATGTACTCCATGACGATGCACATTTTGGGCGCCTTGGTCGACGCCGCCA 360507 Query 1050112 TGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCT 1050159 |||| || || ||||| ||||| | ||| | ||||| || || |||| Sbjct 360508 TGAACAGCACCACGTTGGGATGCCTCAACGCCGTCATCACCCTCACCT 360555 Score = 86.0 bits (94), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 ||||| || |||||||| ||||| ||||||||||| ||||| | || || || || ||| Sbjct 91060 GAGCCGAGGGCCATGAACTCCATGACAATGCACATCTTGGGCGCCTTGGTCGACGCCGCC 91119 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCTCAT 1050162 ||||| || || ||||| || || ||||| | ||||| || | |||| || Sbjct 91120 ATGAACAGCACCACGTTGGGGTGCCGCAACGCCGTCATCACCCGCACCTAAT 91171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740555725327746