Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq932 102 8e-17 seq414 96.9 3e-15 seq447 87.8 2e-12 seq422 87.8 2e-12 seq1225 86.0 6e-12 seq1445 82.4 7e-11 seq1307 82.4 7e-11 seq1223 82.4 7e-11 seq623 82.4 7e-11 >seq932 Length=1165899 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 391071 GTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 391130 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| ||||| || ||||| |||||||| ||||| ||| ||||| || Sbjct 391131 GCGAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTA 391190 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || || | || | ||||||||||||| || Sbjct 391191 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 391250 Query 137395 TTTACGAATATTTGCATAGCT 137415 || ||||| || ||||| ||| Sbjct 391251 TTCACGAAGATCTGCATTGCT 391271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 390387 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 390446 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || |||||||||||||| ||||| || ||||| ||| || || || Sbjct 390447 GCGAAGATAAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 390506 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || || | || | ||||||||||||| || Sbjct 390507 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAGCGTC 390566 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 390567 TTGACGAAGATCTGCATA 390584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| | |||| || || || || || |||||||| ||| | Sbjct 390585 CCGCCGCGCAGACGAAGAACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 390644 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||||||| || || || || |||| ||||| ||||| || || || Sbjct 390645 AGGGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGG 390704 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || || || || | | ||| | |||||| | | || || Sbjct 390705 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCCGAGCTCTCGACC 390764 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||||||||||| || || ||||| || |||||| Sbjct 390765 TCGAGGGTGATAGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATA 390812 >seq414 Length=771140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || || | | ||| ||||| || || || Sbjct 167193 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGCCCGTCCTCGAGCTGCTTGCCG 167134 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||||||||| ||||| || ||||| || || || || Sbjct 167133 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 167074 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | |||||| | | || || || | || | ||||||||||||| || Sbjct 167073 ACGTTTTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTC 167014 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 167013 TTGACGAAGATCTGCATA 166996 >seq447 Length=587387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 241279 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 241220 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || ||||| |||||||| || || || ||||| ||| ||||| || Sbjct 241219 GCGAAGATAAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTTTGCTTG 241160 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || || | || | ||||||||||||| || Sbjct 241159 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTCAGCGTC 241100 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 241099 TTGACGAAGATCTGCATA 241082 >seq422 Length=916903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| || || || | ||| ||||| || || || Sbjct 624966 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTTCCG 624907 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || || ||||| |||||||| || || |||||||| ||| || || || Sbjct 624906 GCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCTTTGTCCTGAATCTTCTGCTTG 624847 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| ||||| || | || | ||||||||||||| || Sbjct 624846 ACGTTCTCGATCGTGTCGCTGGACTCTACCTCGAGGGTGATAGTCTTGCCGGTCAGCGTC 624787 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 624786 TTGACGAAGATCTGCATA 624769 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 624510 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 624451 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||||||||| || || || ||||| ||| || || || Sbjct 624450 GCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 624391 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | ||||||||||||| || Sbjct 624390 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 624331 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 624330 TTCACGAAGATCTGCAT 624314 >seq1225 Length=780 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| | |||| ||| ||||| || || || Sbjct 600 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 541 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||||||||| || || || ||||| ||| || || || Sbjct 540 GCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 481 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | ||||||||||||| || Sbjct 480 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 421 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 420 TTCACGAAGATCTGCAT 404 >seq1445 Length=562458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| | |||| ||| || || || Sbjct 27922 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 27863 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 |||||||| |||| ||||| |||||||| || || || || || ||||| ||| ||| Sbjct 27862 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTT 27803 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | ||||| | | || || || | || | |||||||||||| Sbjct 27802 TGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 27743 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 27742 AGGGTCTTCACGAAGATCTGCAT 27720 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 28144 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 28085 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||| || || || || || ||||| || || || || Sbjct 28084 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 28025 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | ||| | |||||||||||| | || Sbjct 28024 ACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTC 27965 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 27964 TTGACGAAGATCTGCATA 27947 >seq1307 Length=263854 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||| || || || |||||||| ||| | |||| ||| || || || Sbjct 170577 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 170636 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 |||||||| |||| ||||| |||||||| || || || || || ||||| ||| || Sbjct 170637 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTC 170696 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | ||||| ||| || || || | || | ||||||||||| Sbjct 170697 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTT 170756 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 170757 AGGGTCTTGACGAAGATCTGCAT 170779 >seq1223 Length=762 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 297 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 356 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| |||||||| || || || || || ||||| || || || || Sbjct 357 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 416 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | ||| | |||||||||||| | || Sbjct 417 ACGTTCTCAATCGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTC 476 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 477 TTGACGAAGATCTGCATA 494 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| | |||| ||| || || || Sbjct 519 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 578 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 |||||||| |||| ||||| |||||||| || || || || || ||||| ||| ||| Sbjct 579 TTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTT 638 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || || | | || | ||||| | | || || || | || | |||||||||||| Sbjct 639 TGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 698 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || ||||| || ||||| Sbjct 699 AGGGTCTTCACGAAGATCTGCAT 721 >seq623 Length=316623 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || || | ||| ||||| || || ||| Sbjct 68369 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 68428 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||| ||||| |||||||| ||||| || ||||| || || || || Sbjct 68429 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 68488 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | ||||| | | || || || | || | ||||||||||| | || Sbjct 68489 ACGTTTTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 68548 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 68549 TTCACGAAGATCTGCATA 68566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488534711557200