Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq638 98.7 2e-15 seq414 98.7 2e-15 seq1445 96.9 7e-15 seq1223 96.9 7e-15 seq1224 86.0 1e-11 >seq638 Length=1393837 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 262811 CGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCCG 262870 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 262871 TCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 262930 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || || ||||| | | || || || | ||| || Sbjct 262931 TCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAAT 262989 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| ||||| |||||||| Sbjct 262990 CGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 263025 >seq414 Length=771140 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || | || | | || Sbjct 166983 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCA 166924 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || ||||| ||||| || || ||||| Sbjct 166923 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTG 166864 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || || ||||| | | || || || | ||| || Sbjct 166863 TCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGAGTAAT 166805 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 166804 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 166769 >seq1445 Length=562458 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || || || || | Sbjct 28176 TACCGCCACGAAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 28117 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || || || || ||||| || | || ||||| || | Sbjct 28116 CCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGG 28057 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||||| ||||| || || |||||||| || | || Sbjct 28056 GGATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCAATCGTGTCGGACGACTCG 27998 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| ||||||||||| || | ||||| || || |||||||| Sbjct 27997 ACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 27948 >seq1223 Length=762 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || || || || | Sbjct 265 TACCGCCACGAAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 324 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || || || || ||||| || | || ||||| || | Sbjct 325 CCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGG 384 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||||| ||||| || || |||||||| || | || Sbjct 385 GGATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCAATCGTGTCGGACGACTCG 443 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| ||||||||||| || | ||||| || || |||||||| Sbjct 444 ACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 493 >seq1224 Length=756 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| || || || ||||| ||||| || | || || || || || || || ||| Sbjct 756 CCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCC 697 Query 82713 TTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 || || || ||||| ||||| || || ||||| ||||| | | || || || | || Sbjct 696 TTGTCCTGGATCTTCTGCTTC-ACGTTCTCAATGGTATCGCTGGACTCGACCTCGAGGGT 638 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || | ||||| || || |||||||| Sbjct 637 GATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981808066335619