Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq414 87.8 2e-12 seq1225 82.4 7e-11 seq422 82.4 7e-11 >seq414 Length=771140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || |||| ||||| ||| Sbjct 166768 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAG 166827 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| |||||| | || || || || || || || |||||||| || |||||||| Sbjct 166828 CGATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCA 166887 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 ||| | ||||| | || ||||| || ||||| |||| Sbjct 166888 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATG 166925 >seq1225 Length=780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25171 CAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||||| |||| | || || || || | ||||| || | ||||| |||| ||||| Sbjct 399 CAACAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGT 458 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | ||| || |||||| | || || || || ||| || || |||||||| || |||| Sbjct 459 CGAGCGACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCG 518 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 25329 ||||||| | ||||| | || |||||| || ||||| || Sbjct 519 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 558 >seq422 Length=916903 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25171 CAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||||| |||| | || || || || | ||||| || | ||||| |||| ||||| Sbjct 624309 CAACAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGT 624368 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | ||| || |||||| | || || || || ||| || || |||||||| || |||| Sbjct 624369 CGAGCGACACGATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCG 624428 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 25329 ||||||| | ||||| | || |||||| || ||||| || Sbjct 624429 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 624468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085937642720