Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq42 114 2e-20 seq447 96.9 4e-15 >seq42 Length=72740 Score = 114 bits (126), Expect = 2e-20 Identities = 667/1057 (63%), Gaps = 22/1057 (2%) Strand=Plus/Plus Query 110660 AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 ||||||| |||||| | | || || || |||||| | | | ||||||||| || Sbjct 19059 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTC 19118 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || |||||||| || || || |||| ||| || | ||| ||||| || ||||| Sbjct 19119 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATG 19178 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || |||| | || ||| || ||||| | || |||| | ||| || Sbjct 19179 GGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCC 19238 Query 110840 CAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899 ||||| | || | | | | |||| | ||| ||| ||| || | |||| Sbjct 19239 CAGTCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGAC 19298 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG-- 110957 ||||| || ||||| |||| | |||| || | | | || | || | ||| Sbjct 19299 GCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTC---GTTCGAG 19355 Query 110958 -CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA-TTCATCTCCTTGGCTTC 111015 | |||||| |||| || ||||| || ||||| | || || | ||| ||| || Sbjct 19356 GCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTC 19414 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 || || | | || ||| | || || || || || || || || || || | Sbjct 19415 GTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGAT 19474 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATT 111132 || || || ||||| ||||| || || || || || ||| ||||| || | || Sbjct 19475 GCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTT 19531 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||| || || ||| || || ||||| || | ||| || || || || || | Sbjct 19532 GATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTT 19591 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | || || || || | | || || |||| || || |||| || |||| || Sbjct 19592 GTGGTCGAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTT 19645 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| || ||| ||| || ||||||| | | || || || | ||| || Sbjct 19646 GCACACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGA 19705 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || || | | || ||||| ||| |||||| || |||||||| ||||| Sbjct 19706 CTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCAT 19765 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGG 111432 ||||||||| || ||||| |||| || | || ||||| ||| | || ||| Sbjct 19766 GTAGGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACAGTTCCTGGGCCTT 19825 Query 111433 TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 || | | | || || |||||| |||||| ||| | || ||||||| Sbjct 19826 GACCACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTT 19885 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| || ||| | || || || |||| || || || || || ||||| | || || Sbjct 19886 GCCCCACGAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 19945 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 ||| || ||||||||||| ||||| |||||||||||| | |||||||| | Sbjct 19946 CGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGC 20005 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGT 111671 || ||| || | || ||||| || | | || ||||| || | ||| ||||||| Sbjct 20006 GCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGT 20064 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||| ||||| || |||| |||| || ||||| || Sbjct 20065 GCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 20101 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 20331 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCC 20390 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 20391 TCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGTG 20450 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 20451 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAG 20510 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 20511 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 20570 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 112133 | ||| || || | || |||| |||| || |||||| || ||| |||| Sbjct 20571 TGCTGGGGTCGCTCTACGATCTTGCCGTCGACCC--TGAAGAGGTACGAGCGCTCGAGGG 20628 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| |||||||| Sbjct 20629 TCTTGAAGCCAAAGTA 20644 >seq447 Length=587387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 265/394 (67%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 |||||| || || | ||| |||| ||||||| | |||| || | |||||| ||||| Sbjct 397604 GAGGAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 397545 Query 122541 GAGGTTACATGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 |||| || ||| || | || | ||| | ||||||||||| || ||||| | Sbjct 397544 GAGGGC-CACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGA 397486 Query 122600 CGATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCC 122655 ||| || ||| | | |||| | ||| | || ||| || || | || ||| | Sbjct 397485 TGATCTGCTTGGGCACGT-CGGTCGAGGGCTTGTTTACGAGCATGGTGTAGAGGAGG--C 397429 Query 122656 ACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGA 122715 | ||| || || |||||| |||||||| ||| || | || || |||| || Sbjct 397428 A-GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 122716 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAG 122775 || |||||||| || |||||||| | ||| | || | |||||| |||||||||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 397310 Query 122776 ATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGC--A 122832 || ||||| || || || ||| ||||| |||||||||| ||| || | | Sbjct 397309 ATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTTG 397250 Query 122833 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | | ||| ||||| ||||| | |||||||||| Sbjct 397249 TTGATCCACTTCATGGCCCAATCGGCCTTCTTCT 397216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020059541600