Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42 210 3e-49 seq447 100 4e-16 seq108 89.7 6e-13 >seq42 Length=72740 Score = 210 bits (232), Expect = 3e-49 Identities = 875/1361 (64%), Gaps = 36/1361 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 18762 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 18821 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | || | || ||||| ||| ||| | ||| || |||||| || Sbjct 18822 AGCTTAGCGAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 18881 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 ||||| || ||||| || || | | | | || |||||||| ||| || Sbjct 18882 GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 18941 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 || || ||||| || || || ||||| ||| |||| || | || || | | Sbjct 18942 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGTACCGAGCCGTTGTGCGAG 19001 Query 118077 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 || | | ||| | | |||||||| || || | || || || || Sbjct 19002 ACGAGCTTGTTCTTGAGCGCAGGCGACCAGAGGCCGCGCTGCTGCAGCTCGCGCAGAAGG 19061 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 |||| ||||| || || || || |||||| |||| | ||||| ||||||||| Sbjct 19062 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 19121 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 19122 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 19181 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 |||| ||| || ||| || ||||| | | ||| | ||| | | ||||| Sbjct 19182 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 19241 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || | || | | | | | ||| | || |||||| | || | |||||| Sbjct 19242 TCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 19301 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433 ||||| ||||| | |||| || | ||||||||||| ||| | ||| ||| || Sbjct 19302 GGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCAACCTGCGCGAGCTCGTTCGAG---GCG 19358 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAAT-GCGAGCATTCATTGCCTTGGCCTCGTC 118492 | ||||| |||| || || || || || || ||| | || | | ||||||||| Sbjct 19359 ACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCG-GTTGAGCTCGCGGGCCTCGTC 19417 Query 118493 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 118552 | || ||| | | || | || || || || || || || || || |||| ||| Sbjct 19418 GCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCC 19477 Query 118553 AATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCT 118609 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 19478 GATGGGCCTGTGGCGCATGTTCGAGTTGCG---GGCCTCGGGCACGGGGTAGTAGTTGAT 19534 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 19535 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTTGTG 19594 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 || |||| || | | ||| |||| || || |||| || ||||| || || Sbjct 19595 GTC-GAACT-CG----CCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 19648 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 ||| | ||| || ||||||| | | |||||||||| ||| || || Sbjct 19649 CACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 19708 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 |||||||| | || || || || ||||| ||| || || |||||||| |||||||| Sbjct 19709 GATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTA 19768 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA---CATCGGCAGCTGG 118906 ||||| || ||||| | || |||| || ||||| ||| | | | ||| || | Sbjct 19769 GGGCGTGCCGGTCTCGATCTGCGACTCAAGGATAGCGAACCACAGTTCCTGGGC--CTTG 19826 Query 118907 CACA-GTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACT-CT 118964 || | |||| || || ||||| | |||||| ||| | || |||| || Sbjct 19827 ACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCT 19884 Query 118965 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 | ||||| | || | || || || |||| | ||||| ||||| ||||| | || Sbjct 19885 TGCCCCAC-GAGTCAAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCG 19943 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCG 119083 ||| ||| || ||||||||||||||||| || ||||| || |||| |||||||||| || Sbjct 19944 CCCGTCTCCACGCGCTTCATGAAGAGGTCGGGAATCCACAG-GCCGTAGAAGAGATCGCG 20002 Query 119084 ACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 ||| | |||| || | || || || || || | ||||| | ||| ||| Sbjct 20003 --GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCC 20060 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 |||||||| || || ||||| | |||| | ||||| || Sbjct 20061 GCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 20101 Score = 129 bits (142), Expect = 7e-25 Identities = 281/419 (67%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| ||| | ||| ||| || || || Sbjct 20229 GCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCG 20288 Query 119268 CGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 || || ||||| || ||| | || ||| | | || || || || ||| Sbjct 20289 CGGATGTACGAG--TTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCG 20346 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | || |||| | |||| || ||||||| || ||||||||||| ||| Sbjct 20347 ACTTGGAGATGAGGGCACACTGCTTGAGGGTGTCGTAGATGCCCTCGATCGAGTCCTCCT 20406 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | || ||||||||| ||||| || || | || || || ||||||||||| | Sbjct 20407 TCATGGTGAGGAGGAAGCACGACGACAGCTGCGGGCGCGGGGTGCCGGCGTTGAAGAGCG 20466 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | || |||| |||||||||||| | ||||||| Sbjct 20467 TCGGGGTGGCGTGGGTGAAGAGCTGCTGTGACAAGAGGTCGTAGGTCTCGATCACGGCGG 20526 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 | |||| ||| ||| | |||| | || ||||| | ||||| |||||| || | Sbjct 20527 GGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATGTGCTGGGGTCGCTCTA 20586 Query 119566 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 119624 | | || |||| ||| |||||| ||| | |||||||| ||||| ||| Sbjct 20587 CGATCTTGCCGTCGACCCTGAAGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAG 20645 >seq447 Length=587387 Score = 100 bits (110), Expect = 4e-16 Identities = 313/473 (66%), Gaps = 19/473 (4%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 |||||| || || | ||| |||| ||||||| |||| |||| |||||| ||||| Sbjct 397604 GAGGAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 397545 Query 129898 GAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 |||| || ||| |||| || | ||| |||||||||| || || || || | | Sbjct 397544 GAGGGC-CACGGGCAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGA 397486 Query 129957 CGATGGCGTGAATGGTCTC--CGTGCCAGGTCTATT----GCGCAAAGTCTTGAAGAGTT 130010 ||| || ||| | | || | ||| || | | ||| || | || ||| Sbjct 397485 TGATC---TGCTTGGGCACGTCGGTCGAGGGCTTGTTTACGAGCATGGTGTAGAGGAGG- 397430 Query 130011 CCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 || ||| || || |||||| ||||| || ||| ||| | || || |||| | Sbjct 397429 -CA-GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGA 397372 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 | || |||||||| || |||||||| | |||||| || | || || ||| ||||||| Sbjct 397371 GGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGA 397312 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGA--CTTTG 130187 |||| ||||| || ||||| ||| ||| ||||| || |||| || | || Sbjct 397311 AGATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCT 397252 Query 130188 TATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCG 130247 | | | ||||||||| ||||| | ||||| |||| || | || ||||||| ||| | Sbjct 397251 TGTTGATCCACTTCATGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 397192 Query 130248 CTTCAAAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | ||||| | | ||| || ||| || || |||| ||| | || ||||| Sbjct 397191 CGCGGAAGAGGTGGTCCTTCTC-GATGGGGTCCTTGACGTAGGTGTCGATGAG 397140 >seq108 Length=164275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 ||| ||||| || |||||| || || |||||| ||| || |||||||| || ||||| Sbjct 12165 ACCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGCCAGGCCGGGCATGAGGCCGCGCTT 12224 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 ||| | |||||| || | || |||| ||||||||||| ||||| || ||||| Sbjct 12225 CTTGAGCCAGAAGATGGAGCAG---GAGCTCGAGAAGAAGATGCCCTCGACGGCGGCGAA 12281 Query 130153 CGCAAAGAGACGCTCAGCAAAGG--AGCGGGACTT-TGTATCAAACCACTTCATCGCCCA 130209 | | || |||| | |||||| | ||| || | | |||||| | |||||| Sbjct 12282 TCCGACCAGGCGCTGACCAAAGGTCTCTACGCCTTCGGTGGCGATCCACTTGAGCGCCCA 12341 Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGG 130243 | ||||| |||| ||| |||||| ||||||| Sbjct 12342 GTCGGCCTTCTTCTTGATCGACGGGATGGTCTGG 12375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423442000760