Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq42 167 3e-36 seq447 107 2e-18 seq108 96.9 4e-15 >seq42 Length=72740 Score = 167 bits (184), Expect = 3e-36 Identities = 651/1010 (64%), Gaps = 24/1010 (2%) Strand=Plus/Minus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 20101 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 20042 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 20041 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 19982 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||| || |||||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 19981 TGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 19922 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || || |||| || || || | || | ||| ||||||| || | ||| Sbjct 19921 CCCAACGAGGCCCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 19862 Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892 |||||| | || || || ||| | ||| ||| | || ||| || ||||| Sbjct 19861 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAACTGTGGTT 19806 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 ||||| || |||| || | |||||| || || || |||||||| ||||| |||||||| Sbjct 19805 CGCTATCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 19746 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| ||| || || || | | || ||| || || || || || || || Sbjct 19745 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 19686 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 19685 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 19626 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 ||||||| | ||| | | | || || | | || || ||||| || Sbjct 19625 GCCCAAGTTCAT--CACCAACGGCGA----GTTCGACCACAAGAAGCTGCACGACGTCGT 19572 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189 ||| |||||||| ||||| |||| || || || | || | |||||||| || Sbjct 19571 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 19512 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 | || || || || || ||| | ||| | || || || |||| || ||||| || || Sbjct 19511 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 19455 Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 19454 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 19395 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 ||| ||| || |||||||| || ||||||| || | || ||| | || ||| Sbjct 19394 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 19336 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427 |||| || | || | |||| ||||| || || || || |||||| ||| || Sbjct 19335 TTGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 19277 Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487 || | |||| | | | | | | ||||||| | ||| | |||| Sbjct 19276 GACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 19217 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | ||||| || ||| |||||| |||| || ||||| || ||||| ||| | Sbjct 19216 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 19157 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 19156 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 19107 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||| |||| | || ||| |||| | || Sbjct 20578 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCCGCCGTG 20519 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 20518 ATCGAGACCTACGACCTCTTGTCACAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 20459 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 20458 AACGCCGGCACCCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTCACCATGAAGGAGGAC 20399 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 20398 TCGATCGAGGGCATCTACGACACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 20339 Query 104462 GGTATTGG 104469 || || || Sbjct 20338 GGCATCGG 20331 >seq447 Length=587387 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | || ||||| |||||| | || || || | | | ||||| || ||| Sbjct 397170 GAGAAGGACCACCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGGCCGAT 397229 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAG----TCGCGTTCCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||||||||| | | | || ||| | |||| || ||||| ||| | | Sbjct 397230 TGGGCCATGAAGTGGATCAACAAGGAGGGTGTCGAGA-CCTTCGCCGAGCGCCTCATTGG 397288 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 397289 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 397348 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 397349 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 397408 Query 94938 ACTCCAC 94944 |||||| Sbjct 397409 CCTCCAC 397415 >seq108 Length=164275 Score = 96.9 bits (106), Expect = 4e-15 Identities = 186/271 (69%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| || | ||||| || |||||| || || || | ||| ||| Sbjct 12431 CTCATCGACACCTACGTCAAGGACACCGCCGAGAAGGCCCACCTGTTCAACGCCGCCCAG 12372 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA-AAGTC 94790 || | |||| || | ||||| || || ||||| | |||||| | | || ||| Sbjct 12371 ACCATCCCGTCGATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCGCCACCGAAG-- 12314 Query 94791 GCGTT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 94846 |||| |||||| | |||| || ||| ||| || || ||||| |||||||||| Sbjct 12313 GCGTAGAGACCTTTGGTCAGCGCCTGGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 12254 Query 94847 CTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 | | |||| || | || | |||||||||||||| || |||||||| || || || Sbjct 12253 CGAGCTCCTGCTCC---ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCT 12197 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||||||||| ||| ||| ||||| || Sbjct 12196 TCTCCAACGAGCTCATCAGTCGCGACGAAGG 12166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249710754040