Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq42 203 4e-47 seq447 136 4e-27 seq1382 111 2e-19 >seq42 Length=72740 Score = 203 bits (224), Expect = 4e-47 Identities = 549/829 (66%), Gaps = 36/829 (4%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTC 55194 |||||| ||| ||| ||||||| || |||||||| | | || ||| ||||| || Sbjct 19556 GAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA---GGCCCGCAACTC 19500 Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGAT 55254 ||| | || ||| ||||||||| |||||| || |||||| |||||||| |||||||||| Sbjct 19499 GAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGAT 19440 Query 55255 GCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTC 55313 | | || | || || || || || | |||| | ||||||| || | Sbjct 19439 CATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGCGCCATCTTCGAGAC 19380 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACG 55373 |||||||| || || || | | ||| | || || | ||||| |||||| Sbjct 19379 -CATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGTTGAGGGCACCTACC 19321 Query 55374 AGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGT 55433 |||| | | | ||||| || |||||| |||||| ||| || |||||| || Sbjct 19320 AGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGC--GT 19263 Query 55434 CTGACCCCATGTTTGACAAGTTGAAG-----CATG----------ACATTCACTTGTGGG 55478 | || || |||| || | | || | |||| | | | Sbjct 19262 CGTGCC----GTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACG 19207 Query 55479 GCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGG 55538 | || |||||||| || ||||||||||| ||||| || || ||||| | |||||| ||| Sbjct 19206 GTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGG 19147 Query 55539 GCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAG 55598 ||||||||||| || ||||| |||||||||||||||||| ||||| | ||| || | Sbjct 19146 GCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCCTCGCCG 19087 Query 55599 GTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA 55658 | || || | | ||||| ||||||| | || |||||| || | | ||| Sbjct 19086 GCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTGCAGCAGCGCGGCCTCTGGT 19027 Query 55659 ACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCA--GAATC-TGGAGA 55715 || | |||||| | | || | || || || || || | ||| ||||| Sbjct 19026 CGCCTGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTACAGCGCATCGAGGAGA 18967 Query 55716 TTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-T 55773 ||| | || | ||||| || | ||| ||| ||||||||| | || ||| | ||| | Sbjct 18966 -TCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGCAG-CGCGTCAT 18909 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || |||||| || ||||| || |||||||||||| |||||| || ||| ||| Sbjct 18908 CATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTA 18849 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 ||||| | || || | || ||| | | |||||||||||| |||| ||| ||||| Sbjct 18848 CATGGGCGAGCCCTCGTTCGCTAAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGG 18789 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 |||||||| || |||||||| || || ||||| || ||||| ||| Sbjct 18788 CCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCCGCCGCCAACGCG 18740 Score = 156 bits (172), Expect = 5e-33 Identities = 255/360 (71%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGC-GTGTCCGTGAGACGTA 53250 |||||||||| ||| | || | ||| ||| || | | ||| ||| || |||| || Sbjct 20565 TCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCCGCCGTGATCG--AGACCTA 20508 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 |||| | || || || ||| || |||||||| || || || |||||||| || || Sbjct 20507 CGACCTCTTGTCACAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTCAACGCCGGCAC 20448 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||| ||| ||||| |||||||| | | |||||||| ||||||||||| || Sbjct 20447 CCCGCGCCCGCAGCTGTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGG 20388 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| || |||||| ||||||||| ||||||||||| | | || || ||||| | Sbjct 20387 CATCTACGACACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCCT 20328 Query 53431 CCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | | || | | || |||| || | | | ||| || || |||||| | || Sbjct 20327 -CGCCGCGC-ACCGCATCCGCGCCTCCAACTCGTACATCCGCGGCACCAACGGCACCTCC 20270 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | || ||||||||||||| |||| |||| ||||| |||||| |||| ||| Sbjct 20269 AACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGCTACGTCGACCAAGGT 20210 Score = 152 bits (168), Expect = 6e-32 Identities = 292/419 (70%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 || ||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||| Sbjct 20113 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 20054 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | || || ||||| ||| ||| || || | || |||| ||| ||| || || Sbjct 20053 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 19994 Query 53666 TT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 || ||| || ||||||||||| |||||||||||| | ||||||| || || || || Sbjct 19993 TTCTACGGC-CTGTGGATTCCCGACCTCTTCATGAAGCGCGTGGAGACGGGCGGCGACTG 19935 Query 53725 GTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC---TACGGTGAGGAGTT 53781 || || | ||||| |||||| ||||||||| | || | | || ||||||| Sbjct 19934 GTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCT---GTTTGACTCGTGGGGCAAGGAGTT 19878 Query 53782 TAACGAGATGTATCGGACG-TAC--GCAGTTCAGGGCCGCTACAAGAAG-AAGGTCAAGG 53837 | |||| ||| || || ||| |||| |||||||| | | | |||||||| Sbjct 19877 CGAGGAGAAGTA-CGAGCGCTACGAGCAG--GAGGGCCGC-GCGCGCCGCGTGGTCAAGG 19822 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || | ||| || ||||| || ||| | ||||| || ||||| |||||| Sbjct 19821 CCCAGGAACTGTGGTTCGCTATCCTTGAGTCGCAGATCGAGACCGGCACGCCCTACATGC 19762 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 |||||||| | ||||| ||| ||||||| || || ||||| |||| | ||| Sbjct 19761 TGTACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCG 19703 >seq447 Length=587387 Score = 136 bits (150), Expect = 4e-27 Identities = 338/508 (67%), Gaps = 14/508 (3%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||| | ||| |||| || || || | ||||| ||||| || || ||||| Sbjct 397409 GCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTT 397350 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| |||||| || |||||||||||| ||||| || || Sbjct 397349 CTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAA 397290 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTG-------CATCGGAAGTCATCCAAGTCTGAGCCC 74940 | | ||||| | ||||| ||| | || | ||||| || |||| Sbjct 397289 TCCAATGAGGCGCTCGGCGAA-GGTCTCGACACCCTCCTTGTTGATCCACTTCATGGCCC 397231 Query 74941 ATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCT 75000 | || || || ||||||| || || || ||||| || |||||||| |||||| Sbjct 397230 AATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGTGGTCCTTCT 397171 Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060 | ||| ||||||||| |||| || | || |||||| |||| || || || || Sbjct 397170 CGATGGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCT 397111 Query 75061 CGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TG 75117 || || ||| | | | || |||||| | |||||||| | | ||| || ||||| || Sbjct 397110 CGATGG-CGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATG 397052 Query 75118 AAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTA 75177 || | | ||| |||||| ||||||||||| ||||||||| || ||||| | Sbjct 397051 AAGCGGCC--GGCGAGATTCTCGGCCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGGA 396994 Query 75178 CCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCG 75237 | ||||| ||||| | ||| |||| |||| ||||| | ||||| ||| Sbjct 396993 CGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTCCCAGTGCTTCATGTCGGAGC 396934 Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||| | |||||| |||||||||| Sbjct 396933 TCAGATCGACTTCCTCGGCCGTCCAGAA 396906 >seq1382 Length=70568 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 || || ||||| || ||| ||| | | |||| | |||||||| |||| |||||| Sbjct 60329 CGTGTGCCGAACTGCCCAGCCGGATAGAGGAGGGGGACGTTGTTGGAGCCCGGGAAGTTT 60270 Query 117410 TGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGC 117469 || |||| || ||| || || ||||| ||| || || ||||| || ||||||||| Sbjct 60269 TGCGCCATGTGGACGATGGTCGAATGGAGCGACGCTTCGCCGTGGTGGTAGGCCGTCTGC 60210 Query 117470 TCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT-CAGGTTCTTCTTGAG 117528 || | ||||||||| || ||||| ||||||||||| || | || ||| ||| ||||| Sbjct 60209 TCGGACACGTAGCCGGCTAGCTGCGCCACCTTCATTTC-GCTGTGCAGTTTCCGCTTGAA 60151 Query 117529 GCAGGCATAAATCACCTT 117546 ||| ||||| | ||||| Sbjct 60150 GCACGCATACAAGACCTT 60133 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 152073 CCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATT 152132 ||| || || ||||| |||| || | ||||||| || |||||||| |||| ||| || Sbjct 60330 CCGTGTGCCGAACTGCCCAGCCGGATAGAGGAGGGGGACGTTGTTGGAGCCCGGGAAGTT 60271 Query 152133 CTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTG 152192 || |||| | || || || || || |||||| |||||||| || |||||||| Sbjct 60270 TTGCGCCATGTGGACGATGGTCGAATGGAGCGACGCTTCGCCGTGGTGGTAGGCCGTCTG 60211 Query 152193 CTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAG 152252 ||| | | ||| || || | ||||||||||||||| || | ||| ||| ||||| Sbjct 60210 CTCGGACACGTAGCCGGCTAGCTGCGCCACCTTCATTTCGCTGTGCAGTTTCCGCTTGAA 60151 Query 152253 ACAGGCGTAAATCACCTT 152270 || || || | ||||| Sbjct 60150 GCACGCATACAAGACCTT 60133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205596055800