Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_028979.1 Length=57253 Score E Sequences producing significant alignments: (Bits) Value seq405 82.4 3e-11 >seq405 Length=129346 Score = 82.4 bits (90), Expect = 3e-11 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 43903 CAAGAACCTGCTCGGTATGCCGTGGCGCGTGGCGCTGGCGCTGCAGGACGACGGTTGGAT 43962 |||| | ||| |||| ||||||||||||||||| | || || |||| ||| || ||| Sbjct 77174 CAAGGATCTGATCGGCTTGCCGTGGCGCGTGGCGTTTGCACTCCAGGCCGATGGCTGGTA 77115 Query 43963 TCTGCGCAACGACGTTGTGTGGCAGAAGCCCAA-CGCGATCCCGCAGTCGAGCCGCGACC 44021 ||| | |||| |||| ||||| |||||||| || | |||| | ||| |||||| Sbjct 77114 CTTGCACTCCGACATTGTCTGGCACAAGCCCAATTGCCAGCCCG-AATCGGTGCGCGACA 77056 Query 44022 GGCTCAC-CGGCCGCTACGAGCACGTGTTCCTGTTCGTCAA 44061 ||| || || ||| ||||| |||| ||| |||| | ||| Sbjct 77055 GGCCGACGCGCGCGC-ACGAGTACGTCTTCTTGTTTGCCAA 77016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183084693087430