Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1307 125 5e-24 seq447 113 3e-20 >seq1307 Length=263854 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || || Sbjct 170551 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCG 170492 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || ||||| || || | || || ||||| Sbjct 170491 GACACCATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 170432 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| || ||| | | ||| |||||| Sbjct 170431 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTGGCCGACTACAAC 170372 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 170371 ATCCAGAAGGAGTCCAC 170355 >seq447 Length=587387 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 241311 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCC 241370 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || || || Sbjct 241371 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 241430 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| || ||| | | ||| |||||| Sbjct 241431 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACTCTGGCCGACTACAAC 241490 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 241491 ATCCAGAAGGAGTCCAC 241507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003334252668