Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000193105.1_202011-03- 22] 1,521 sequences; 46,714,639 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq447 102 1e-16 >seq447 Length=587387 Score = 102 bits (112), Expect = 1e-16 Identities = 381/591 (64%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 397429 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 397370 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 397369 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 397311 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTGG----CTTCGTT 48313 ||||| || ||||| || ||| | | || | ||| || | || | | || || Sbjct 397310 GATGCCCTCGACGGCGGCGAATCCAATGAGGCGCTCGGCGAAGGTCTCGACACCCTCCTT 397251 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| |||||||| ||||||||||| || | |||| || || || || Sbjct 397250 GTTGATCCACTTCATGGCCCAATCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 397191 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || || ||||| || || || | || || Sbjct 397190 GCGGAAGAGGTGGTCCTTCTCGATGGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 397131 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || || || ||||| || || | ||| || | Sbjct 397130 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGG 397071 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || || || Sbjct 397070 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTGGC 397011 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || | || || || || || | | |||| | | || | ||| Sbjct 397010 GGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTCCCA 396951 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 396950 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 396891 Query 48674 TTTATACATATTCCATATATCACT-GTATTGGATTGGGAAAATAACAAATC 48723 || ||||| | ||| || | || ||| |||| ||||| | || |||| Sbjct 396890 CTTGTACATCTCCCAGAT-GCGCTGGTAGCGGATGGGGAACAGCACGAATC 396841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655592609440