Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq219895 87.8 2e-12 seq201739 87.8 2e-12 seq182753 87.8 2e-12 seq176821 87.8 2e-12 >seq219895 Length=3859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 316 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 375 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 376 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 433 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 434 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 493 Query 151191 C 151191 | Sbjct 494 C 494 >seq201739 Length=1047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 338 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 279 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 278 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 221 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 220 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 161 Query 151191 C 151191 | Sbjct 160 C 160 >seq182753 Length=1021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 684 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 743 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 744 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 801 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 802 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 861 Query 151191 C 151191 | Sbjct 862 C 862 >seq176821 Length=809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 472 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 531 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| || |||||||| ||| Sbjct 532 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCG 589 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 590 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 649 Query 151191 C 151191 | Sbjct 650 C 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607109306589920