Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq205955 196 7e-45 seq205954 196 7e-45 seq205953 196 7e-45 seq205952 196 7e-45 seq210976 179 5e-40 >seq205955 Length=2194 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1037 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 978 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 977 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 921 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 920 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 866 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 865 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 807 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 806 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 747 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 746 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 687 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 629 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 628 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 569 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 568 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 510 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 509 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 459 >seq205954 Length=2163 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 1037 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 978 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 977 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 921 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 920 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 866 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 865 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 807 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 806 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 747 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 746 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 687 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 629 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 628 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 569 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 568 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 510 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 509 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 459 >seq205953 Length=2829 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 335 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 394 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 395 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 451 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 452 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 506 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 507 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 565 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 566 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 625 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 626 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 685 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 743 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 744 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 803 Query 125464 CGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 804 CCGGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 862 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 863 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 913 >seq205952 Length=2760 Score = 196 bits (216), Expect = 7e-45 Identities = 406/591 (69%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 335 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 394 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 395 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 451 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 452 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 506 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 507 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 565 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 566 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 625 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 626 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 685 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| ||| | || ||||| | |||| ||| ||||||| | | || | Sbjct 686 ACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 743 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 744 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 803 Query 125464 CGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| ||||||||||||||||| ||||||||||| || | Sbjct 804 CCGGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCC 862 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 863 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 913 >seq210976 Length=3319 Score = 179 bits (198), Expect = 5e-40 Identities = 332/483 (69%), Gaps = 8/483 (2%) Strand=Plus/Plus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 640 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 699 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 700 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 759 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGAC-GGTGGCTACTGGAGCCTAATGTGCCCCGA 97075 || || |||||||||||||||| | ||| || ||| ||||| || | |||||| | Sbjct 760 CCCGACCTGTTCATGAAGCGCGTGGA-GACGGGCGGCGACTGGTCGCTCTTTTGCCCCAA 818 Query 97076 CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTA 97135 | | | ||||| |||| ||| | |||||| | ||||| |||| |||||| | ||| Sbjct 819 CGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTA 878 Query 97136 CGAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| |||||||| || | | || ||| | || | || |||||| ||||| Sbjct 879 CGAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCGCCAT 935 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG 97252 | | | | ||| | ||||| || || || ||||| || |||||||| || || | Sbjct 936 CCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGG 995 Query 97253 CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 ||| |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 996 CAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGT 1055 Query 97313 AGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAA 97372 ||||| | || || |||||| ||| || ||| ||||| ||| || |||||||| Sbjct 1056 CCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAA 1115 Query 97373 GTT 97375 ||| Sbjct 1116 GTT 1118 Score = 89.7 bits (98), Expect = 8e-13 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| ||||| | Sbjct 1792 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCCGATCGCTC 1850 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---CAG 98155 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | || Sbjct 1851 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAA 1910 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 1911 GC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTA 1967 Query 98216 TCT 98218 || Sbjct 1968 CCT 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739005095056480