Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq189625 102 2e-16 seq65422 100 7e-16 seq213694 96.9 8e-15 seq211834 93.3 1e-13 seq215351 91.5 3e-13 seq186083 87.8 4e-12 >seq189625 Length=695 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 246 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 305 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 306 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 364 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 365 CACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGT 424 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 425 CTTGACGAAGATCTGCAT 442 >seq65422 Length=223 Score = 100 bits (110), Expect = 7e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || || || || || || || | ||| || || || || || || || Sbjct 207 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 148 Query 104462 TTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || ||||||||||| ||||| || || || | ||||||||| | || ||||| || || Sbjct 147 TTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGT 89 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||| || || || || || || |||||||| Sbjct 88 AATAGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 50 >seq213694 Length=3719 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | |||||| Sbjct 2190 AAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTC 2249 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| || || || || || || || Sbjct 2250 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTC 2309 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||| || || || || | || || | || | || ||||| || || || | Sbjct 2310 CTGAATCTTTTGCTTGACGTTCTCGATCGTGTC-CGAGCTCTCCACCTCGAGGGTGATGG 2368 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 |||| || || || || || || || |||||||| ||||| Sbjct 2369 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCGCGTGTA 2410 >seq211834 Length=2527 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || |||| |||||| || || || || || Sbjct 1368 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGACCGTCCTCGAGCTGCTTGCCG 1427 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 1428 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 1486 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || || ||||| || || || | Sbjct 1487 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCG 1545 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 1546 TCTTGACGAAGATCTGCAT 1564 >seq215351 Length=6454 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 5556 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 5615 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || |||||||||||| || Sbjct 5616 GCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 5675 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || || || ||||| || || || || Sbjct 5676 ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 5735 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 5736 TTGACGAAGATTTGCATT 5753 >seq186083 Length=725 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 520 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 579 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 580 GCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 638 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || || || ||||| || || || | Sbjct 639 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGG 697 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 698 TCTTCACGAAGATCTGCAT 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148127108753584