Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq211834 114 1e-20 seq217354 104 2e-17 seq215351 102 7e-17 seq212968 98.7 8e-16 seq209235 96.9 3e-15 seq189625 96.9 3e-15 seq213694 95.1 1e-14 seq186237 91.5 1e-13 seq184308 89.7 4e-13 >seq211834 Length=2527 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| ||||||||| |||||||| || |||| || ||||||| |||||| Sbjct 1746 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1805 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | || ||||||||| || ||| Sbjct 1806 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 1865 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||||||| | ||||| ||||| || || || || |||||| Sbjct 1866 TGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTG 1925 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 1926 AGGGTCTTCACGAAGATCTGCATAGT 1951 >seq217354 Length=4840 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 2617 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2558 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | ||||||||| || |||||||||| Sbjct 2557 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 2498 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 2497 CTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 2438 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 2437 GAAGATCTGCATTGT 2423 >seq215351 Length=6454 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 5550 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 5609 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | ||||||||| ||| || Sbjct 5610 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 5669 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| |||| ||||| ||||| || ||||| || |||||| Sbjct 5670 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 5729 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || || || ||||| || Sbjct 5730 AGGGTCTTGACGAAGATTTGCATTGT 5755 >seq212968 Length=3840 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| |||||||| ||| || | Sbjct 3682 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 3623 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | ||||||||| || |||||||||| Sbjct 3622 GATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 3563 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 3562 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 3503 Query 48715 AAAAATCTGCAT 48726 || || ||||| Sbjct 3502 GAAGATTTGCAT 3491 >seq209235 Length=1252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 1080 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 1021 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | ||||||||| || || | || ||||||||| || ||| Sbjct 1020 TTACCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 961 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || ||| | ||||| ||||| || ||||| || || || Sbjct 960 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTC 901 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 900 AGGGTCTTCACGAAGATCTGCATTGT 875 >seq189625 Length=695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 240 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 299 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| ||| ||| Sbjct 300 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 359 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || ||| | ||||| ||||| || ||||| || ||||| Sbjct 360 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 419 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 420 AGGGTCTTGACGAAGATCTGCAT 442 >seq213694 Length=3719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| ||||||||||| || | Sbjct 2211 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 2270 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | || ||||||||| ||| || ||||||| Sbjct 2271 GATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTT 2330 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | |||| ||||| || ||||| || ||||| || || ||||| Sbjct 2331 CTCGATCGTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 2390 Query 48715 AAAAATCTGCATCGTGT 48731 || |||||||||| || Sbjct 2391 GAAGATCTGCATCGCGT 2407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 48538 CTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 ||| || |||||||| || || | || ||||||| ||||||||||| || | || Sbjct 1986 CTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGAT 2045 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657 | ||||||||| || || | || ||||||||| || |||||||| | | | Sbjct 2046 GAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTC 2105 Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 ||||| |||| ||||| ||||| || ||||| || ||||| || || || || || Sbjct 2106 GATGGTGTCGGACGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACGAA 2165 Query 48718 AATCTGCAT 48726 |||||||| Sbjct 2166 GATCTGCAT 2174 >seq186237 Length=484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||||| || ||||||| |||||||| ||| || | Sbjct 295 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 354 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | |||||||||| || |||||||||| Sbjct 355 GATGAGGCGCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTT 414 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | ||| ||||| || ||||| || ||||| || || || || Sbjct 415 CTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGAC 474 Query 48715 AAAAATCTGC 48724 || |||||| Sbjct 475 GAAGATCTGC 484 >seq184308 Length=541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||| | || ||||||| |||||||| ||| || | Sbjct 217 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 276 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | |||||||||| || |||||||| | Sbjct 277 GATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTT 336 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || |||| ||||| ||||| || || || || || ||||| || || || Sbjct 337 CTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 396 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 397 GAAGATCTGCAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420112745989748