Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq193245 91.5 1e-13 seq193244 91.5 1e-13 seq190105 91.5 1e-13 seq182554 91.5 1e-13 >seq193245 Length=911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 324 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 265 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 264 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 208 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 207 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 176 >seq193244 Length=588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 324 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 265 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 264 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 208 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 207 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 176 >seq190105 Length=1086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 1002 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 943 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 942 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 886 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 885 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 854 >seq182554 Length=593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 270 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 329 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 330 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 386 Query 71536 AAT-GACGCAAACTTGTCGCCCATCTCTGGGT 71566 | ||||| |||||||| || ||| | |||| Sbjct 387 CCTCGACGCGAACTTGTCTCCGATCACCGGGT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337849269919392