Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq221648 132 8e-27 seq203572 131 3e-26 seq184045 131 3e-26 seq203571 102 1e-17 seq217721 96.9 5e-16 seq165935 80.6 4e-11 >seq221648 Length=5181 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 4972 CTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 5031 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 5032 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 5091 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 5092 CTCGAGAACGTCATCCGCGACGCCGTAACCTACACCGAGCACGCCCGCAGGAAGACCGTC 5151 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| ||||||| || Sbjct 5152 ACTGCCATGGACGTCGTCTACGC 5174 >seq203572 Length=3255 Score = 131 bits (144), Expect = 3e-26 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3056 CTCCGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3115 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 3116 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 3175 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 3176 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 3235 Query 16634 ACCTCCATGGATATCGTCTA 16653 || ||||||| ||||||| Sbjct 3236 ACTGCCATGGACGTCGTCTA 3255 >seq184045 Length=678 Score = 131 bits (144), Expect = 3e-26 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 479 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 538 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 539 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTGCTCAAGGTCTTC 598 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| | ||||| ||| Sbjct 599 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCAGGAAGACCGTC 658 Query 16634 ACCTCCATGGATATCGTCTA 16653 || ||||||| ||||||| Sbjct 659 ACTGCCATGGACGTCGTCTA 678 >seq203571 Length=3213 Score = 102 bits (112), Expect = 1e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 3058 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 3117 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| ||||| Sbjct 3118 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTCTTC 3177 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 3178 CTCGAGAACGTCATCC 3193 >seq217721 Length=1698 Score = 96.9 bits (106), Expect = 5e-16 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | Sbjct 5 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGC 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| |||||||| ||| ||| |||| || ||| | ||| ||||||||||| Sbjct 65 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCTGTGACCTACACCGAGCACGCC 124 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| ||||| ||||||| ||||||| || | || | || ||||| Sbjct 125 CGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 180 >seq165935 Length=127 Score = 80.6 bits (88), Expect = 4e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | | Sbjct 123 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGT 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 || | ||| |||||||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 63 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78872454251364