Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq215351 105 6e-18 seq217354 100 3e-16 seq184308 98.7 9e-16 seq189625 89.7 5e-13 seq193542 84.2 2e-11 >seq215351 Length=6454 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || || || | |||||| |||| | || || Sbjct 5753 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 5694 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || ||||||||| ||||| || || || || |||||||| Sbjct 5693 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 5634 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | | | || |||||| || Sbjct 5633 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAA 5574 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || | || || ||||| Sbjct 5573 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCT 5541 >seq217354 Length=4840 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 2425 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2484 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 2485 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2544 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || |||||| || ||||| || | | | || |||||| || Sbjct 2545 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2604 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 2605 CATCCAGAAGGAGTCGACCCTCCACCTCGTCCT 2637 >seq184308 Length=541 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||||||| |||| | || || | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 349 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || ||||| ||||| ||||| || ||||||||||| Sbjct 348 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 289 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | || ||||| ||| Sbjct 288 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCTGACTACAAC 229 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 228 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 197 >seq189625 Length=695 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | || ||| |||| | || || | | Sbjct 442 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 383 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || || |||||| ||||| || || || ||||||||||| Sbjct 382 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 323 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 322 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 263 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 262 ATCCAGAAGGAGTCCACGCTCCACCTCGTCCT 231 >seq193542 Length=1181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 26761 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||| ||| ||||||| | || || || || | ||||| || | |||||| |||| | Sbjct 386 CAACCAACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTC 327 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || ||||||||||||| | || || |||||||| ||||| || || || || Sbjct 326 GAGTCGTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCC 267 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || || || || | ||||| | | |||||| || ||||| || | | | | | Sbjct 266 CCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCT 207 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || || ||| |||| || || || Sbjct 206 GACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477335619626560