Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq210976 241 3e-58 >seq210976 Length=3319 Score = 241 bits (266), Expect = 3e-58 Identities = 857/1325 (65%), Gaps = 26/1325 (2%) Strand=Plus/Plus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || |||||||| || || || || || || |||||||| || || || || Sbjct 622 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 681 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||| || || || || ||| ||| || || ||||| || || || ||||| Sbjct 682 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 741 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| | || ||| || | |||| || ||||||||||||||| | || | ||| Sbjct 742 TTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGG 801 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || ||||||||||| |||| || || || | ||| ||||| | || | | Sbjct 802 TCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAG 861 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAATTCCCGCACA 364115 | ||||| || || |||||| || || | ||| ||| | Sbjct 862 GAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCC----A 917 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | |||| ||||| |||||| | || |||||||| ||||| || || ||||| ||| |||| Sbjct 918 GGAGCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTA 977 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAA 364235 ||| || | |||||| |||||||||||||||||||||| || || || ||| | || Sbjct 978 CAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAA 1037 Query 364236 CCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC 364295 ||| || || ||| | | | ||||| | ||||||||| ||||| || ||||| || Sbjct 1038 CCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 1097 Query 364296 GTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGA 364355 ||| ||||||| || ||| | | | || |||||||||||| | || | || Sbjct 1098 CTCGCTCGCGCTGCCCAAGTTCATCACCAACGGCGAGTTTGACCACCAGAAGCTGCACGA 1157 Query 364356 CGTAACCT-ATCATGCT-ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 ||| | | | || | || || ||| ||||||| ||||||| || || || || Sbjct 1158 CGT--CGTGAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCC 1215 Query 364414 ATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGC 364473 | || || ||| || || ||||| || | || || || | || || |||||| Sbjct 1216 GTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGC 1275 Query 364474 CTCGCTGACGTTTTTATG---ATGCTCAA--GATGGCATTTGATTCGCCTGACGCTCGTG 364528 || || ||||| || ||| |||| | | ||| | || || | || || || | Sbjct 1276 CTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGA---GA-GCGAC-GAGGCCCGCG 1330 Query 364529 TTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATT 364588 || || | ||||| || || || || | ||||| || || ||| || Sbjct 1331 AGCTCAACCGCGCCATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGC 1390 Query 364589 TGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAAT 364648 | || | | |||| | ||| || || ||||| || || || |||| || Sbjct 1391 TCGCGCAGGTCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGC 1450 Query 364649 TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTT 364708 ||||| || || ||| ||| ||| || | | | ||| |||||| ||||| || Sbjct 1451 TCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCG 1510 Query 364709 CCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTT 364768 ||||| | |||| ||| |||||||| ||| | ||||||||||||||||| | Sbjct 1511 CCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCT 1570 Query 364769 CTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATT 364828 | || | |||||||| || |||||||||||||| || || | || | ||| | || Sbjct 1571 CGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACA 1630 Query 364829 CACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTT 364888 | ||||| | || |||| || || | || || || || |||| | || || Sbjct 1631 CCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCC 1690 Query 364889 CCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 | ||||| || | || | | || | |||||| | || || | || || || Sbjct 1691 AGCAGCGCGGCCTCT-GGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCG 1749 Query 364948 GTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 || ||| || || |||| | || || || | ||| | ||||| ||||| ||||| Sbjct 1750 GTCCAGCGCA-TCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGA 1808 Query 365007 AATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 | | ||| |||| || ||||| ||||||||| || | ||| ||||| Sbjct 1809 GCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAG 1868 Query 365067 CCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTT 365126 ||||||| | ||||| | |||| |||| | | |||||||| || || ||||| || Sbjct 1869 CCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTT 1928 Query 365127 CTACG 365131 ||||| Sbjct 1929 CTACG 1933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299650581806936