Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq217354 109 5e-19 seq215351 107 2e-18 seq189625 107 2e-18 seq97205 98.7 9e-16 seq184308 95.1 1e-14 seq221315 89.7 4e-13 seq193542 89.7 4e-13 seq81341 84.2 2e-11 seq24856 84.2 2e-11 >seq217354 Length=4840 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| |||| |||||| ||| Sbjct 2425 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2484 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 2485 CGACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 2544 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 2545 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 2604 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 2605 CATCCAGAAGGAGTCGAC 2622 >seq215351 Length=6454 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 5753 AATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 5694 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||||||| ||||| || ||||| || |||||||| Sbjct 5693 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCA 5634 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 5633 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAA 5574 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 5573 CATCCAGAAGGAGTCCACCCTTCA 5550 >seq189625 Length=695 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | |||||| |||| |||||| ||| | Sbjct 442 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 383 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || |||||| ||||| || ||||| ||||||||||| Sbjct 382 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 323 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 322 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 263 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 262 ATCCAGAAGGAGTCCAC 246 >seq97205 Length=160 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||||||||||||| | || || ||||||||| ||| Sbjct 144 ATCACCCTCGAGGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGAC 85 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || || ||||| ||||||||||| ||| | || || | || || ||||| ||||| || Sbjct 84 AAGGAGGGCATCCCTCCCGATCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 26 >seq184308 Length=541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 349 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || ||||| ||||| |||||||| ||||||||||| Sbjct 348 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 289 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 288 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 254 >seq221315 Length=7247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || || |||| |||||| ||| Sbjct 4165 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACACTCGAGGTCGAGTCCAG 4224 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 4225 CGACACCATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 4284 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || || Sbjct 4285 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 4344 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 4345 CATCCAGAAGGAGTCCACCCTTCA 4368 >seq193542 Length=1181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| ||||||| | || || || || | ||||| || | || ||| |||| ||| Sbjct 386 CAACCAACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTC 327 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||||||||||| | || || |||||||| ||||| || ||||| || Sbjct 326 GAGTCGTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCC 267 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || || || ||| | || || | | ||||||||| ||||| || Sbjct 266 CCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 223 >seq81341 Length=139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24030 ACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAA 24089 ||| ||||||||||| ||| ||||||||||||| | || || || ||||| ||||| Sbjct 138 ACCCTCGAAGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAG 79 Query 24090 GAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 |||||||| || || || || ||| | || || | || || ||||| ||||| || Sbjct 78 GAAGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGA 23 >seq24856 Length=175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| |||| |||||| | ||||||||||||| | || || || ||||| | Sbjct 155 CGATCACCCTCGAGGTCGAGAGCTCCGACACCATCGAGAACGTGAAGCAGAAGATCCAGG 96 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| || ||||| || ||| | || || | || |||||||| ||||| | Sbjct 95 ACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGG 36 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 | | | | | | || ||| || ||||| || || Sbjct 35 ACGGCCGTACCCTCGCCGACTACAACATCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428774074850940