Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq162262 122 6e-23 seq33663 122 6e-23 seq29198 122 6e-23 seq29197 122 6e-23 seq149650 105 4e-18 seq135434 100 2e-16 seq55031 100 2e-16 seq193542 95.1 8e-15 seq155558 86.0 4e-12 seq105367 84.2 1e-11 seq100236 84.2 1e-11 >seq162262 Length=127 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | ||||||| || || |||||||| Sbjct 105 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATATGGACAGTGGGAATCTCGT 46 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 45 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11 >seq33663 Length=127 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| | |||||||| Sbjct 15 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTTGGAATCTCGT 74 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 75 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 109 >seq29198 Length=127 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | |||||||||| || |||||||| Sbjct 32 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGGGGTAGATAGGGACAGTGGGAATCTCGT 91 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 92 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 126 >seq29197 Length=127 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | |||||||||| || |||||||| Sbjct 32 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGCGGTAGATAGGGACAGTGGGAATCTCGT 91 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 92 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 126 >seq149650 Length=105 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 26 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 85 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 86 GCTGACAATATTTAGCCTT 104 >seq135434 Length=127 Score = 100 bits (110), Expect = 2e-16 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||| | Sbjct 94 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCATCACGGTACTTGTTCGCTATCGGTCTCTC 35 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 34 GCTGACAATATTTAGCCTT 16 >seq55031 Length=127 Score = 100 bits (110), Expect = 2e-16 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||| | Sbjct 29 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACTGTACTTGTTCGCTATCGGTCTCTC 88 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 89 GCTGACAATATTTAGCCTT 107 >seq193542 Length=1181 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| |||||| || || ||||| |||| || ||| |||| || | || Sbjct 175 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGC 234 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || |||||||| || ||||| || || || | ||||| ||| || |||||| || ||| Sbjct 235 TTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTT 294 Query 38235 TGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || || || | || || || || | || || || || || | Sbjct 295 TGCTTCACGTTCTCGATGGTGTCGGACGAC--TCGACCTCGAGGGTGATGGTCTTGCCAG 352 Query 38293 TCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| |||||||| || ||||| Sbjct 353 TCAGGGTCTTCACGAAGATTTGCAT 377 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || ||||| || || ||||| || ||||||| |||| ||| || |||||| || Sbjct 2 TGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 61 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||||| |||| || || || || || || || | || || || ||||| Sbjct 62 TTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTACCG 121 Query 38292 GTCAAGG--TTTTCACGAATATCTGCATG 38318 |||| || | ||||| || ||||||||| Sbjct 122 GTCAGGGTCTCTTCACAAAGATCTGCATG 150 >seq155558 Length=127 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||||||||||||||||| | | |||||||||| || |||||||| Sbjct 75 AAGCCCGTTCCATTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 16 Query 25957 TAATCCTTTCATGCG 25971 |||||| |||||||| Sbjct 15 TAATCCATTCATGCG 1 >seq105367 Length=127 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 3/62 (5%) Strand=Plus/Plus Query 19964 TTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT---AATATTTAGCC 20020 |||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1 TTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCTGACAATATTTAGCC 60 Query 20021 TT 20022 || Sbjct 61 TT 62 >seq100236 Length=127 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 5/74 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||||||||||| | | |||||||||| || |||||||| Sbjct 54 AAGCCCGTTCACTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 113 Query 25957 TAATCCTTTCATGC 25970 |||||| ||||||| Sbjct 114 TAATCCATTCATGC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334041987188588