Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq182753 98.7 1e-15 seq219895 89.7 6e-13 seq201739 89.7 6e-13 seq176821 89.7 6e-13 >seq182753 Length=1021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||||||||||||||| | || | ||||| |||||||| ||| ||||| Sbjct 118 ACGCCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGC-CAAAAGGGTACGGTGGGCAT 176 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||| ||| | Sbjct 177 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATCATCGT 236 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 237 CAACCCGCACGCCATTCCCTCGCGAATGACCAT 269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 686 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 745 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | |||| || ||| | |||||| || ||||||| | | Sbjct 746 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCGCGAC 805 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | |||||||| |||| Sbjct 806 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCCAG 865 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 866 TTCCTCAAGGAGCG 879 >seq219895 Length=3859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 318 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 377 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | |||| || ||| | |||||| || ||||||| | | Sbjct 378 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCGCGAC 437 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | |||||||| |||| Sbjct 438 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCCAG 497 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 498 TTCCTCAAGGAGCG 511 >seq201739 Length=1047 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 336 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 277 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | |||| || ||| | |||||| || ||||||| | | Sbjct 276 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCGCGAC 217 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | |||||||| |||| Sbjct 216 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCCAG 157 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 156 TTCCTCAAGGAGCG 143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||| ||||||||||| | || | ||||| |||||||| ||| ||||| Sbjct 896 ACGCCCCAGATCGGCGACAAGTTCAGTTCGCGCCATGGC-CAAAAGGGTACGGTGGGCAT 838 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||| ||| | Sbjct 837 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATCATCGT 778 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 ||||| || ||| || || || |||||||| Sbjct 777 AAACCCGCACGCCATTCCCTCGCGAATGACCAT 745 >seq176821 Length=809 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 474 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 533 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || | | ||| | |||| || ||| | |||||| || ||||||| | | Sbjct 534 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGGGCCGATCGCGCGAC 593 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| ||| | || ||||||||||| |||||||| | |||||||| |||| Sbjct 594 GGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCCAG 653 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 654 TTCCTCAAGGAGCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609697313084800