Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq205955 140 4e-28 seq205954 140 4e-28 seq205953 140 4e-28 seq205952 140 4e-28 >seq205955 Length=2194 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || ||| | |||| ||||| || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 934 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 935 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 994 TTCTTGTACATCTCCCAGATG 1014 >seq205954 Length=2163 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || ||| | |||| ||||| || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 934 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 935 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 994 TTCTTGTACATCTCCCAGATG 1014 >seq205953 Length=2829 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 915 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 856 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 855 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 797 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 796 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 737 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || ||| | |||| ||||| || || Sbjct 736 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 676 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 617 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 616 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 557 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 556 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 497 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 496 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 438 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 437 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 379 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 378 TTCTTGTACATCTCCCAGATG 358 >seq205952 Length=2760 Score = 140 bits (154), Expect = 4e-28 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 915 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 856 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| | | | || || ||||| Sbjct 855 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 797 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT- 32835 || || || || || || || | | || | ||| | | || ||| || | Sbjct 796 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 737 Query 32836 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||||| ||||| ||||||||||| || ||| | |||| ||||| || || Sbjct 736 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| || || || || || || || || || || | || || Sbjct 676 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 617 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || || ||||| || ||||| |||||||| ||||||||||| | ||||||| Sbjct 616 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 557 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 556 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 497 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCC 33132 || || || ||||| || || || || || | | ||||| | |||| || | || Sbjct 496 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCC 438 Query 33133 AATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 437 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 379 Query 33192 TTTTTATACATATTCCAGATG 33212 || || ||||| | ||||||| Sbjct 378 TTCTTGTACATCTCCCAGATG 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631875667140800