Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq193542 125 6e-24 seq215351 120 3e-22 seq186083 114 1e-20 seq216288 105 6e-18 >seq193542 Length=1181 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 |||||||||||| || || ||||| |||| || || ||||||| |||| || ||||| Sbjct 381 AACAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTC 322 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| |||||| |||||||||| ||| ||||| || || || || ||||| Sbjct 321 GTCCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 262 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | || || ||| || || Sbjct 261 CCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCTGACTA 202 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || || Sbjct 201 CAACATCCAGAAGGAGTCGACTCTCCA 175 >seq215351 Length=6454 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | ||||| || ||||||| |||| || |||||| Sbjct 5755 ACAATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 5696 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| |||||||||| || ||||| || || || || || || Sbjct 5695 TCCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGAT 5636 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || |||||||| || | || || | |||||| | | ||| ||| Sbjct 5635 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTAC 5576 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 5575 AACATCCAGAAGGAGTCCACCCTTCA 5550 >seq186083 Length=725 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 716 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 657 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || || ||||| || || || || |||||||| Sbjct 656 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 597 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| ||| ||| ||||| Sbjct 596 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 537 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || |||||||| || Sbjct 536 ATCCAGAAGGAGTCCACGCTCCA 514 >seq216288 Length=1153 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 74 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 133 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 134 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 193 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| | | ||| ||||| Sbjct 194 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCCGACTACAAC 253 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 254 ATCCAGAAGGAGTCGACTCTCCA 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432156907788620