Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq205955 127 2e-24 seq205954 127 2e-24 seq205953 127 2e-24 seq205952 127 2e-24 >seq205955 Length=2194 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 493 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 551 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 552 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 611 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 612 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 671 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 672 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 731 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 732 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 791 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 792 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 851 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 852 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 911 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 912 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 968 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 969 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1028 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1029 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1073 >seq205954 Length=2163 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 493 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 551 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 552 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 611 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 612 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 671 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 672 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 731 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 732 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 791 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 792 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 851 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 852 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 911 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 912 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 968 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 969 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1028 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1029 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 1073 >seq205953 Length=2829 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 879 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 821 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 820 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 761 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 760 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 701 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 700 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 641 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 640 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 581 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 580 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 521 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 520 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 461 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 460 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 404 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 403 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 344 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 343 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 299 >seq205952 Length=2760 Score = 127 bits (140), Expect = 2e-24 Identities = 384/585 (66%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 879 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 821 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 820 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 761 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 760 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 701 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | | || | || ||||| ||| || ||| || |||| |||| || | Sbjct 700 GACAGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGAC 641 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 640 GTAGGTGTCGATAAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 581 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 580 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 521 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 520 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 461 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 460 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 404 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 403 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 344 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 343 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555317265391520