Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq215351 93.3 3e-14 seq189625 93.3 3e-14 seq186083 93.3 3e-14 seq193542 91.5 1e-13 seq221315 89.7 4e-13 seq211834 89.7 4e-13 seq219548 84.2 2e-11 seq208097 84.2 2e-11 seq186237 84.2 2e-11 >seq215351 Length=6454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||| |||||||| || || | || Sbjct 5535 AGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 5594 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| || | || ||| Sbjct 5595 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCC 5654 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| |||||||| | | ||| | | || | || ||| |||| || Sbjct 5655 TTGTCCTGAATCTTTTGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGT 5713 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || || ||||| || || || || |||||||||||| Sbjct 5714 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 5753 >seq189625 Length=695 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| ||||||||| |||||||| || ||| Sbjct 216 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 275 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 276 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 335 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||||| | | ||| | | || | || ||| Sbjct 336 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCGAC 394 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 395 CTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 442 >seq186083 Length=725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| ||||||||| |||||||| || ||| Sbjct 490 CCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 549 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||||||||| || ||||||||||| || || Sbjct 550 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 609 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TCGC 34078 | || ||| |||||| ||| || ||||| | | ||| | | || | || | ||| Sbjct 610 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATCGTGTCCG-AGCTCTCGA 667 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 668 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 716 >seq193542 Length=1181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 151 CCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCC 210 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||||||||| || ||||||||||| || || Sbjct 211 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 270 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || |||||||| | | ||| | | || | || ||| Sbjct 271 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTGTCGGACGACTCGAC 329 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || || || || || ||||| |||||||||||| || Sbjct 330 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTGTT 381 >seq221315 Length=7247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 4393 ACCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 4334 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 4333 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 4274 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | | | | || | || ||| Sbjct 4273 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATGGTGTCGCTGGACTCGAC 4214 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || ||||| || || ||||| ||||| |||||| Sbjct 4213 CTCGAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 4165 >seq211834 Length=2527 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || |||||| |||||| || |||||||| || ||| Sbjct 1722 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCC 1781 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 1782 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 1841 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | ||| |||||| || || ||||| | | ||| | |||| | || ||| Sbjct 1842 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGAC 1900 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||| ||||| Sbjct 1901 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1948 >seq219548 Length=9812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||| || || |||||| ||||||||| |||||||| || ||| Sbjct 734 CCGCCGCGCAGACGGAGCAAGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 793 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||||||||| || || ||||||||||| || ||| Sbjct 794 AGGGTGCCCCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 853 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 854 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 882 >seq208097 Length=3227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || ||||||||| |||||||| || |||| || Sbjct 2354 AGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGA 2295 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || || | || ||| Sbjct 2294 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 2235 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | |||| || ||| |||| || Sbjct 2234 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCAGATGACTCGACCTCGAGGGT 2176 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || || ||||| ||||| |||||| || Sbjct 2175 GATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 2133 >seq186237 Length=484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || || ||||||||| |||||||| || ||| Sbjct 32 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 92 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 151 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||||| | ||| | | |||| | || ||| Sbjct 152 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CATTCTCGATAGTATCGCTGGACTCGAC 210 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || |||||||| ||||| Sbjct 211 CTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395989317521896