Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq205955 131 4e-25 seq205954 131 4e-25 seq205953 131 4e-25 seq205952 131 4e-25 >seq205955 Length=2194 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1034 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 975 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 974 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 918 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 917 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 859 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 858 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 800 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 799 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 740 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 739 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 684 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 683 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 624 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 623 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 564 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 563 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 504 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 503 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 444 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 443 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 388 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 387 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 330 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 329 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 270 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 269 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 210 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 209 GGCAAGACCAACTTCTTCGAA 189 >seq205954 Length=2163 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1034 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 975 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 974 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 918 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 917 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 859 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 858 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 800 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 799 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 740 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 739 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 684 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 683 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 624 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 623 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 564 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 563 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 504 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 503 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 444 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 443 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 388 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 387 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 330 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 329 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 270 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 269 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 210 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 209 GGCAAGACCAACTTCTTCGAA 189 >seq205953 Length=2829 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 338 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 397 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 398 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 454 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 455 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 513 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 514 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 572 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 573 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 632 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 633 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 688 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 689 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 748 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 749 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 808 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 809 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 868 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 869 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 928 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 929 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 984 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 985 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1042 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1043 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1102 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1103 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1162 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1163 GGCAAGACCAACTTCTTCGAA 1183 >seq205952 Length=2760 Score = 131 bits (144), Expect = 4e-25 Identities = 555/861 (64%), Gaps = 33/861 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 338 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 397 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||||||||| ||||| | | ||| | ||||| || ||||| || Sbjct 398 ACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAACAAC 454 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC-CGATGGTATTGT 243053 ||||| | || |||||||| ||| | | | || ||||| |||| ||| || || || Sbjct 455 GACGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGCATCGT 513 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || | || ||| | ||| || ||| || ||||| || | Sbjct 514 GGCCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCT 572 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | | |||| || ||| ||||| || || || | || ||||||| Sbjct 573 TCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCG 632 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAAC 243228 || | || ||| | || | ||| || || | | ||| ||||||||| | | Sbjct 633 ACACC--TACGTCAA--GGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACC 688 Query 243229 ATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGT 243282 | || | || | || ||||| | ||||| ||||||| | || || Sbjct 689 GTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTC 748 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 | | || || ||||||||||||| | | ||| || || || | || ||||| Sbjct 749 GAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 808 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 || |||||| ||||||| ||||| ||| || | ||||| ||||||| | | Sbjct 809 AGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGT 868 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| | ||||| ||||| |||||||| ||| | |||| || | || | Sbjct 869 AACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACC 928 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAA--ACGGTC--AAACAAATCATCACAGAAGCAGT 243518 | |||| ||||||| || |||| ||| || || || |||||| || || || Sbjct 929 ATGCTCGTCAACAAGC--CC--TCGACCGACGTTCCCAAGCAGATCATCCTCGAGGCCGT 984 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAAC 243576 || | || ||||||||| | ||| |||| | ||| || || ||||||||| Sbjct 985 CGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAAC 1042 Query 243577 TCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGT 243636 | || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 1043 GCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGC 1102 Query 243637 TATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAA 243696 | || || |||||| | ||||| || | | ||||||||||| || || | Sbjct 1103 TGCGACAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAG 1162 Query 243697 GGGAAAACTAACTTCTTCGAA 243717 || || || |||||||||||| Sbjct 1163 GGCAAGACCAACTTCTTCGAA 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099746556623800