Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq210976 235 7e-57 seq209094 107 2e-18 seq205955 98.7 1e-15 seq205954 98.7 1e-15 seq205953 98.7 1e-15 seq205952 98.7 1e-15 seq197790 86.0 8e-12 >seq210976 Length=3319 Score = 235 bits (260), Expect = 7e-57 Identities = 879/1359 (65%), Gaps = 32/1359 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 1973 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 1914 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| | | || ||||| ||| ||| | ||| || |||||| || Sbjct 1913 AGCTTGGCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 1854 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||||| || ||||| || || | | | | || |||||||| || || Sbjct 1853 GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 1794 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| || || || ||||| ||| |||| |||| ||||| | | Sbjct 1793 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAG 1734 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 || | | ||| | | |||||||| || || || ||| || || ||| Sbjct 1733 ACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGG 1674 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 |||| ||||| || || || || |||||| |||| | ||||||||||||||| Sbjct 1673 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 1614 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 1613 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 1554 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| ||| || |||||| ||||| | ||| | ||| | | ||||| Sbjct 1553 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 1494 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | || | | | | | |||| | || |||||| | || | |||||| Sbjct 1493 TCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 1434 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154 ||||| ||||| | |||| || | |||||| |||| ||| | ||| ||| || Sbjct 1433 GGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GCG 1377 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTC 116213 | ||||| |||| || || ||||| || ||| | || || | | ||||||||| Sbjct 1376 ACCAGGGCGGCGTAGTAGATGGTCTCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTC 1318 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | || ||| | | || | || || || || || || || || || |||| ||| Sbjct 1317 GCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCC 1258 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCT 116330 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 1257 GATGGGCCTGTGGCGCATGTTCGAGTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGAT 1201 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 1200 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTG 1141 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 ||||| || || | | || || |||| || || |||| || ||||| || || Sbjct 1140 GTCAAACTCGCC-GT-TGGTGAT-GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 1087 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 ||| | ||| || ||||||| | | ||||| |||| || || || Sbjct 1086 CACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 1027 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 |||||||| | || || || || ||||| ||| || || |||||||| ||||| || Sbjct 1026 GATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTA 967 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC--TGGC 116628 ||||| || ||||| | || |||| ||| || || ||| | || ||| || | Sbjct 966 GGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGAC 907 Query 116629 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC-TTC 116687 | |||| || || ||||||| |||||| ||| |||| ||||| || Sbjct 906 CACGCGGCGC--GCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTG 849 Query 116688 ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACC 116747 ||||| | || | || || || |||| | || || ||||| ||||| | || || Sbjct 848 CCCCAC-GAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 790 Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGAC 116806 | ||| || ||||||||||| ||||| || ||||| || |||| |||||||||| || Sbjct 789 CGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAG-GCCGTAGAAGAGATCGCG-- 733 Query 116807 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 732 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 673 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 |||||| || || ||||| | |||| | |||||||| Sbjct 672 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 634 Score = 122 bits (134), Expect = 1e-22 Identities = 216/315 (69%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | ||||||| | |||| || ||||||| || Sbjct 412 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 353 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 352 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 293 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 292 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 233 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | |||||| | || ||||| | |||| Sbjct 232 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 173 Query 117271 TATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTC 117330 | |||||| || | | | || |||| ||| |||||| ||| | |||| Sbjct 172 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCCTGAAGAGGTAGGAGCGCTCGAGGGTC 113 Query 117331 TTGAGACCAAAATAG 117345 |||| ||||| ||| Sbjct 112 TTGAAGCCAAAGTAG 98 >seq209094 Length=12734 Score = 107 bits (118), Expect = 2e-18 Identities = 187/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 31509 CGGACATCTCAACTACGAGCTTCTATGCGAGCCACGTCATCACAGCGGGTGGCGTTGGTG 31568 |||||||||| || || |||||||| ||| |||| ||||||| ||| | ||| || | Sbjct 7136 CGGACATCTCGACGACCAGCTTCTACGCGTCCCACATCATCACGGCGTGCGGCTCGGGCG 7195 Query 31569 GTATGGTCATGTTCAATGACGATGAGCACCTTAAGCGAGCTCTCATGTTTAGGGATTGGG 31628 | |||||||||||||| || | |||| ||||| || |||| | || |||| Sbjct 7196 GCATGGTCATGTTCAACTCGGAGAGGTACCTCAAGCGCGCGACGATGTACCGCGACTGGG 7255 Query 31629 GGCGTATCGGTGACAATATTGAGGAGCCAAGTGAACGCTTCAACCACTCCGTAGATGGTA 31688 | || ||||| ||||| ||| || || ||||||| | | || || || | Sbjct 7256 GTCGGATCGGCGACAACGCCGAGAAGGTGGAGGAGCGCTTCACCGAGGTGGTCGACGGGA 7315 Query 31689 TCCCCTACGACTGGAAGTTCCTCTATGGTGTCGCCGGG-TATCACCTCAAG-GCATGTGA 31746 || | |||||| ||||||||||| || || || ||| || || ||||| ||| | || Sbjct 7316 TCTCGTACGACACCAAGTTCCTCTACGGCGT-GCTGGGCTACAACTTCAAGAGCA-GCGA 7373 Query 31747 GATGAATGCCGCCTTTGGTCTCGTCCA 31773 | | || ||||| ||||| || ||||| Sbjct 7374 GGTCAACGCCGCGTTTGGGCTGGTCCA 7400 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 31016 AAGAAAGTGTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATTAAAGCC 31075 ||||| |||| || || |||||| ||||| | || |||||| || || || ||| Sbjct 6598 AAGAAGGTGTACTACGCCCCCAACGGCTTTGAGGCCTACGGGGAGCTCGAGATCAAGGCC 6657 Query 31076 GTTGAGGATTGCCTTCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGCA-CTATGGAGTT 31134 || ||||||||| | || ||||||||||| |||||||| | || | | || || Sbjct 6658 GTCGAGGATTGCTTGCGAAGCGGCTGGCTCGCCGGCTTTGGAAACTACACCCAACGA-TT 6716 Query 31135 TGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACACGGACTCTTTGTAAACTCCGG 31191 ||||||||||| |||| | || || |||| |||| || ||||| ||||| || Sbjct 6717 CGAGAAGAGGGTCGCCGGCCTCTTTGGCAAGAAGTACGGCCTGTTTGTCAACTCGGG 6773 >seq205955 Length=2194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 471 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 530 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 531 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 590 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG---AGCGGGACTTTGTATCAAACCACTTCAT 127707 ||||| | | ||||||||||| |||| | | || | | | ||||||||| Sbjct 591 GGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 650 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| | ||||| |||| || | | || ||||||| ||| || Sbjct 651 CGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 >seq205954 Length=2163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 471 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 530 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 531 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 590 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG---AGCGGGACTTTGTATCAAACCACTTCAT 127707 ||||| | | ||||||||||| |||| | | || | | | ||||||||| Sbjct 591 GGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 650 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| | ||||| |||| || | | || ||||||| ||| || Sbjct 651 CGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 >seq205953 Length=2829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 901 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 842 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 841 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 782 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG---AGCGGGACTTTGTATCAAACCACTTCAT 127707 ||||| | | ||||||||||| |||| | | || | | | ||||||||| Sbjct 781 GGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 722 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| | ||||| |||| || | | || ||||||| ||| || Sbjct 721 CGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 >seq205952 Length=2760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 901 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 842 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 841 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 782 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG---AGCGGGACTTTGTATCAAACCACTTCAT 127707 ||||| | | ||||||||||| |||| | | || | | | ||||||||| Sbjct 781 GGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 722 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| | ||||| |||| || | | || ||||||| ||| || Sbjct 721 CGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 >seq197790 Length=69624 Score = 86.0 bits (94), Expect = 8e-12 Identities = 276/423 (65%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||| | || |||| ||||||||||| ||||| || | ||||| ||| Sbjct 846 AACCGGTGCCCACGCCATCGGCTCCGTTCACGAGCACCATCGGCACGACTGGCAAGTAGT 905 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 || || || | || || |||||||| | |||| ||| | ||| || || Sbjct 906 AGCGGGGCTCGACCGGGATGCCGTCATCGTCGAGGTAGTCGAGGATCTTGTCGTCGTCCG 965 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 175925 ||| |||||| | |||| | | || ||| ||||||||| | | || Sbjct 966 GATGAAAGATGGTGCGAGTGATGGCGCTCAGGCGCGTGTGGATGTACCTGGCGCTGGCCG 1025 Query 175926 CATCTTTGCCACCCATGAGACGCGTCCCAAA-TTGACCACATGGCTCAAGGAGATTGATA 175984 | || | |||||| ||| || | || || ||| || | || | || || ||||| Sbjct 1026 CGTCCCTTCCACCCCGGAGGCGGCTGCCGAAGTTGCCCGCCGGG-TGGAGCAGGTTGATG 1084 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||||| | |||| ||||||| | ||| || || | ||| || |||| Sbjct 1085 TTGTTGGAGCCCACAAAGTCGTTCGCCATCCCGACGATGGTCTTGTTGAGAGATTCTTCG 1144 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGC-CAACTGCGCCACCTTCATCTC 176103 ||||| ||||||||||| | | || | |||| || || |||||| | ||||| Sbjct 1145 CCGTGGTGGTAGGCCGAGTGCAGGGAGACCGA-ACCGCTCAGTTGGGCCACCCTAATCTC 1203 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 || ||||| ||||| | ||| | | | |||||| | ||| ||||||||||| Sbjct 1204 CTCGCTGAGGGCCTTGTCCAGGCAGGTGAAGAGGACCTTGCGCTGGCCGGGCTTGAGGCC 1263 Query 176164 GTC 176166 ||| Sbjct 1264 GTC 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611806650067680