Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq200304 100 2e-15 seq200303 100 2e-15 seq200302 100 2e-15 seq71497 89.7 3e-12 >seq200304 Length=4680 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 1324 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 1383 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 1384 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 1436 >seq200303 Length=4717 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 1796 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 1737 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 1736 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 1684 >seq200302 Length=4700 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 1796 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 1737 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 1736 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 1684 >seq71497 Length=269 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 68 AAGGTCGCCTACCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 127 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || |||||| Sbjct 128 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3258667352358704