Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq182546 98.7 3e-16 seq182545 98.7 3e-16 seq217110 87.8 5e-13 seq182547 87.8 5e-13 >seq182546 Length=603 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 485 TGGTCGTAGTGGTAGGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGAGCGCGTG 426 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 425 GGCCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 368 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || ||||||| Sbjct 367 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATAAGGT 308 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 307 CTTTGGGCTTTAAGCCCTTCGG 286 >seq182545 Length=829 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 485 TGGTCGTAGTGGTAAGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGATCGCGTG 426 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 425 GGTCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 368 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || ||||||| Sbjct 367 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATAAGGT 308 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 307 CTTTGGGCTTTAAGCCCTTCGG 286 >seq217110 Length=3661 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2496 GTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAA 2555 ||| |||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 27 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 86 Query 2556 CGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTAGG 2606 || || | ||| || | || ||||||||||| | || || || || || Sbjct 87 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTTTAAGCCCTTCGG 137 >seq182547 Length=1229 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2496 GTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAA 2555 ||| |||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 27 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 86 Query 2556 CGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTAGG 2606 || || | ||| || | || ||||||||||| | || || || || || Sbjct 87 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTTTAAGCCCTTCGG 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129759806879432