Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq200902 111 5e-19 >seq200902 Length=5583 Score = 111 bits (122), Expect = 5e-19 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 2373 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 2432 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 | ||| || || | | | ||| |||| ||||| ||||||| ||| || | | Sbjct 2433 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCACGCGACTCCGGACCAAAG 2492 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| ||| |||||| ||||| || | || ||| | | ||||| ||||| || Sbjct 2493 TCGTCCTTCACAAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGCCC 2552 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCT 302857 || ||||||||||| |||| ||| | || || |||||| || || ||| | | |||| Sbjct 2553 TCGACGTTCTGCTGACCCACGCAGGCAAGCACCTGCGAGATGTT--GATCGCCGAACCCT 2610 Query 302858 TGGAGCCAGCATTTACCAT 302876 |||| || ||| | ||||| Sbjct 2611 TGGACCCGGCAATCACCAT 2629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467635950945076