Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq219895 82.4 7e-11 seq201739 82.4 7e-11 seq182753 82.4 7e-11 seq176821 82.4 7e-11 >seq219895 Length=3859 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 306 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 365 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 366 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 423 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 424 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 483 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 484 ACGGCGCGGCC 494 >seq201739 Length=1047 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 348 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 289 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 288 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 231 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 230 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 171 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 170 ACGGCGCGGCC 160 >seq182753 Length=1021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 674 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 733 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 734 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 791 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 792 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 851 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 852 ACGGCGCGGCC 862 >seq176821 Length=809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 462 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 521 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 522 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 579 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 580 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 639 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 640 ACGGCGCGGCC 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474722084091040