Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq182753 91.5 2e-13 seq201739 87.8 2e-12 >seq182753 Length=1021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || ||||||| | || || || || || || Sbjct 121 CCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGCCAA-AAGGGTACGGTGGGCATCAT 179 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 180 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATCATCGTCA 238 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 239 ACCCGCACGCCATTCCCTCGCGAATGACCAT 269 >seq201739 Length=1047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || ||||||| | || || || || || || Sbjct 893 CCCCAGATCGGCGACAAGTTCAGTTCGCGCCATGGCCAA-AAGGGTACGGTGGGCATCAT 835 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||||||| | | Sbjct 834 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATCATCGTAA 776 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 775 ACCCGCACGCCATTCCCTCGCGAATGACCAT 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520099953828640