Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq186237 111 3e-19 seq184308 104 5e-17 seq211834 102 2e-16 seq221315 89.7 1e-12 >seq186237 Length=484 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 32 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || || || ||||| || | || || || || || Sbjct 92 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 151 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| ||||| || || ||||| | | || || Sbjct 152 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACATTCTCGATAGTATCGCTGGACTCGAC 210 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| |||||| ||||| |||||||| Sbjct 211 CTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 258 >seq184308 Length=541 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || |||| || | | |||| Sbjct 194 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCG 253 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || ||||| ||||| || |||||||| Sbjct 254 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTG 313 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || ||||| || | || || || | || || Sbjct 314 TCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 372 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 373 CGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 408 >seq211834 Length=2527 Score = 102 bits (112), Expect = 2e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 1338 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1397 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| |||||| || || || || || || ||||| || | || || || ||||| Sbjct 1398 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 1457 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || || ||||| || |||||||| ||||| || || || ||||| || || | || | Sbjct 1458 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATCGTGTCCG-AGCTCTCGA 1515 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | |||||| || || |||||||| Sbjct 1516 CCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1564 >seq221315 Length=7247 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || | || | | ||| Sbjct 4608 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 4549 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 4548 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTG 4489 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || ||||| || | | || || || | ||| || Sbjct 4488 TCCTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAAT 4430 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 4429 CGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 4394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979037685332572