Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq211834 104 2e-17 seq217354 91.5 1e-13 seq186237 91.5 1e-13 seq221315 87.8 1e-12 seq209235 87.8 1e-12 seq215351 84.2 1e-11 seq189625 82.4 5e-11 seq184308 82.4 5e-11 >seq211834 Length=2527 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| |||||||| |||| || ||||| |||| || | || Sbjct 1746 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1805 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || ||| Sbjct 1806 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 1865 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||| ||||| || || || || | ||||| || || || || Sbjct 1866 TGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGT 1924 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || |||||||||||||||||| Sbjct 1925 GAGGGTCTTCACGAAGATCTGCATAGTTGGT 1955 >seq217354 Length=4840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || ||||| || Sbjct 2617 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2558 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| || ||||| || | | | Sbjct 2557 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 2499 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | ||||| || || || || | || || | Sbjct 2498 TCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 2439 Query 33737 CAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | ||||||||||| ||||| ||||| || ||| Sbjct 2438 CGAAGATCTGCATTGTTGGCTGCTGTGTGTAGCGC 2404 >seq186237 Length=484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || || || |||| || | || || ||||| || Sbjct 67 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 126 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || ||||| |||| ||| Sbjct 127 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CAT 185 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || ||||| || || || || | |||||||| || || || | ||| || | Sbjct 186 TCTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGA 245 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 246 CAAAGATCTGCATA 259 >seq221315 Length=7247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 4368 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 4309 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || | || | || || ||||| || ||| Sbjct 4308 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 4249 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | ||||| || || || || Sbjct 4248 TGCTTCA-CGTTTTCGATGGTGTCGCTGGACTCGACCTCGAGTGTGATGGTCTTGCCGGT 4190 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| || || Sbjct 4189 CAGGGTCTTCACGAAGATCTGCATTGTAGG 4160 >seq209235 Length=1252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 1080 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 1021 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| || | || | ||| || ||||| || ||| Sbjct 1020 TTACCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 961 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | |||||||| || || || || | ||||| || || || || Sbjct 960 TGCTTCA-CGTTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 902 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 901 CAGGGTCTTCACGAAGATCTGCATTGTTGG 872 >seq215351 Length=6454 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 5550 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 5609 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||||||| | || | || || ||||| ||| || Sbjct 5610 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 5669 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||| || || || || | ||||| || || || || Sbjct 5670 TGCTTC-ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 5728 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT----TGGTGTGTTTATCGC 33767 | || || || ||||| ||||| || || ||||| || ||| Sbjct 5729 GAGGGTCTTGACGAAGATTTGCATTGTAGGCTGCTGTGTGTAGCGC 5774 >seq189625 Length=695 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 240 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 299 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| ||| ||| Sbjct 300 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 359 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||||| || || || || | || || || || || || Sbjct 360 TGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 418 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 419 CAGGGTCTTGACGAAGATCTGCAT 442 >seq184308 Length=541 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| || | ||| ||||| |||| || | || Sbjct 206 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGC 265 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||||| ||||| || ||| Sbjct 266 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTC 325 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||| || || || || | |||||||| || || || Sbjct 326 TGCTTC-ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 384 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 385 GAGGGTCTTGACGAAGATCTGCAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327815659772160