Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq210976 125 7e-24 seq186237 98.7 9e-16 seq189625 95.1 1e-14 seq193542 93.3 4e-14 seq212968 91.5 1e-13 seq215351 89.7 5e-13 seq215017 87.8 2e-12 seq184308 86.0 6e-12 seq211834 84.2 2e-11 seq209235 84.2 2e-11 seq58749 82.4 7e-11 >seq210976 Length=3319 Score = 125 bits (138), Expect = 7e-24 Identities = 324/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTC 147518 |||| || ||||| ||||| |||||| ||| |||| || || ||||||| |||| || Sbjct 1106 GCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACG-TGTACTGGACGACCTC 1048 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||||||||| | | ||| || | | ||||| ||| || | ||||| Sbjct 1047 CGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCA 988 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AA 147635 ||||| ||| | |||||||| || ||||||||||| |||| || | ||| || Sbjct 987 GGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAA 928 Query 147636 CCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || ||| ||||| || ||| ||| || | ||||||||| | ||||| |||| Sbjct 927 CCA---CAGCTCCTGGGCCTTGACCACGCGGC-GCGCGCGGCCCTCCTGCTCGTAGCGCT 872 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 ||||| | ||| ||||| | ||| | | ||| |||||||| || | || | Sbjct 871 CGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGC 812 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | |||||||| | || ||| | ||||| ||| ||||| || || | ||||| Sbjct 811 AAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 752 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAA 147874 | |||| | |||||||| || | ||||| ||| ||| |||| | | Sbjct 751 GGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGA 692 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | | | | ||||||| ||||||||||| || | ||||| ||| | ||||| || |||| Sbjct 691 GGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCT 632 Query 147935 TTCCGCC 147941 | || || Sbjct 631 TACCACC 625 >seq186237 Length=484 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 65 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCG 124 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || |||| Sbjct 125 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 184 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| | | ||| || |||| || | ||| || || ||||| || || Sbjct 185 TTCTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTG 244 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 245 ACAAAGATCTGCAT 258 >seq189625 Length=695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || |||| Sbjct 249 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 308 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| ||||| || || || ||| || || |||| Sbjct 309 AAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 368 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || || ||||| || || Sbjct 369 TTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTG 428 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 429 ACGAAGATCTGCATG 443 >seq193542 Length=1181 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| || |||||||| || |||| | Sbjct 184 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCA 243 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || ||||| |||| Sbjct 244 AAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 303 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || |||||||| || || Sbjct 304 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 363 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 364 ACGAAGATTTGCAT 377 >seq212968 Length=3840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 3684 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 3625 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || || || || || || || | Sbjct 3624 AAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 3565 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| || | || || || ||||| || || Sbjct 3564 TTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 3505 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 3504 ACGAAGATTTGCATG 3490 >seq215351 Length=6454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || || |||||||| || |||| Sbjct 5559 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 5618 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || || || ||| ||||| |||| Sbjct 5619 AAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACG 5678 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || || || || || || Sbjct 5679 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 5738 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 5739 ACGAAGATTTGCAT 5752 >seq215017 Length=6979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||| |||| ||||| | ||||| ||||| ||| | | | | || | ||||| | Sbjct 2512 GCCACGACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCACCGTGCTTC 2571 Query 51792 CTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAAT 51851 | ||| |||||||||||| ||||||| | |||||||||| || |||||||||| Sbjct 2572 TTACCGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAAC 2631 Query 51852 TCGTGCACGTGGAATCCGTGCAGGCC 51877 ||||| |||||||| ||||| |||| Sbjct 2632 TCGTGGACGTGGAAGCCGTGGGGGCC 2657 >seq184308 Length=541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | || || || |||||||| || |||| Sbjct 215 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 274 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| |||||||| || || || || || |||| Sbjct 275 AAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACG 334 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | ||| || || || || || || Sbjct 335 TTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTG 394 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 395 ACGAAGATCTGCATG 409 >seq211834 Length=2527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| || ||| || || |||||||| || |||| Sbjct 1755 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 1814 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| || || || || || || || || || || |||| Sbjct 1815 AAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 1874 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 1875 TTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTC 1934 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1935 ACGAAGATCTGCAT 1948 >seq209235 Length=1252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| ||||| | Sbjct 1071 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACCCGCG 1012 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || || || || || || || || |||| Sbjct 1011 AAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 952 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || |||||||| || || Sbjct 951 TTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 892 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 891 ACGAAGATCTGCAT 878 >seq58749 Length=127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 51793 TGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATT 51852 ||||| |||||||||||| ||||||| | |||||||||| || |||||||||| | Sbjct 92 TGCCGAAGGGGTTGAAGTGGCCGCCCGCACTCACGCAGCCGTTGGTGTTGTCGCCGAACT 33 Query 51853 CGTGCACGTGGAATCCGTGCAGGCC 51877 |||| |||||||| ||||| |||| Sbjct 32 CGTGGACGTGGAAGCCGTGGGGGCC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475290105245280