Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq215351 96.9 3e-15 seq186237 87.8 2e-12 >seq215351 Length=6454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || | ||||| |||| ||||| | | Sbjct 5752 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 5693 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 5692 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 5633 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || |||||| || ||||| || | | | | || ||| ||||| Sbjct 5632 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 5573 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || || |||||| |||| Sbjct 5572 ATCCAGAAGGAGTCCACCCTTCA 5550 >seq186237 Length=484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | ||||| || ||||||| |||| ||||| ||| | Sbjct 258 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCCAGC 199 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || || || || || || || ||||| || || || || ||| Sbjct 198 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 139 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || |||||| || ||||| || | | | | | ||| ||||| Sbjct 138 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 79 Query 25355 ATTCAAAAAGAATCCACC 25372 || || || || || ||| Sbjct 78 ATCCAGAAGGAGTCGACC 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443860665087360