Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq205955 136 5e-27 seq205954 136 5e-27 seq205953 136 5e-27 seq205952 136 5e-27 >seq205955 Length=2194 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 456 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 515 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 516 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 574 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 575 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 634 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| ||| | |||| || || || | Sbjct 635 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGG 694 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 695 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 754 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 755 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 814 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 815 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 874 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 875 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 933 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 934 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 994 TTCTTGTACATCTCCCAGAT 1013 >seq205954 Length=2163 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 456 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 515 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 516 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 574 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 575 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 634 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| ||| | |||| || || || | Sbjct 635 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGG 694 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 695 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 754 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 755 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 814 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 815 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 874 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 875 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 933 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 934 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 993 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 994 TTCTTGTACATCTCCCAGAT 1013 >seq205953 Length=2829 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 916 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 857 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 856 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 798 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 797 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 738 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| ||| | |||| || || || | Sbjct 737 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGG 678 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 677 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 618 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 617 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 558 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 557 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 498 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 497 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 439 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 438 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 379 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 378 TTCTTGTACATCTCCCAGAT 359 >seq205952 Length=2760 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 916 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 857 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 856 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 798 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 797 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 738 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| ||| | |||| || || || | Sbjct 737 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGG 678 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 677 CGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGT 618 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 617 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 558 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 557 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 498 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 497 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 439 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 438 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 379 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 378 TTCTTGTACATCTCCCAGAT 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685004791842720