Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq209235 116 3e-21 seq186237 114 1e-20 seq212968 107 2e-18 seq189625 98.7 8e-16 seq216288 96.9 3e-15 seq215351 95.1 1e-14 seq213694 95.1 1e-14 seq193542 93.3 4e-14 >seq209235 Length=1252 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| |||||||| ||||| Sbjct 1074 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTACCC 1015 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | |||||| || || |||||| | ||| Sbjct 1014 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 955 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || || || | ||||| ||||| || Sbjct 954 ACGTTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 895 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 894 TTCACGAAGATCTGCAT 878 >seq186237 Length=484 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 29 TTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 88 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | || |||| |||||||| || |||||| | ||||||||||| || ||||| Sbjct 89 GCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 148 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | || | ||| || ||| || Sbjct 149 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATAGTATCGCTGGACTCG 208 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || | ||||| ||||| || || |||||||| |||||| Sbjct 209 ACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCATA 259 >seq212968 Length=3840 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| || ||| Sbjct 3687 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 3628 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| || || |||||| | || Sbjct 3627 GCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 3568 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| ||||| || Sbjct 3567 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 3508 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 3507 TTCACGAAGATTTGCAT 3491 >seq189625 Length=695 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 442 TGCCGCCGCGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 501 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| |||||||| || || ||| | ||||||||||| ||||| || | Sbjct 502 CGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGG 561 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| | | ||| | Sbjct 562 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTTTCGA 621 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || || || ||||| ||||| Sbjct 622 CCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 670 >seq216288 Length=1153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| |||||||| || ||| Sbjct 270 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 211 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| | ||| Sbjct 210 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 151 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | ||||| ||||| || Sbjct 150 ACGTTCTCGATAGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 91 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 90 TTGACGAAGATCTGCATA 73 >seq215351 Length=6454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | || | || | || || || || || || ||||||||| Sbjct 5523 TTGCCACCGCGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 5582 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | |||| |||| |||||||| || |||||| | ||||||||||| ||||| || Sbjct 5583 GCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGG 5642 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||| | |||| | | || | ||||| | | || Sbjct 5643 GGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGGACGACTCG 5702 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| || || || || || ||||||||||| Sbjct 5703 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 5752 >seq213694 Length=3719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 1615 TTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1674 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | || |||| |||||||| || || ||| | ||||||||||| || ||||| Sbjct 1675 GCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 1734 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | | || | ||||| | | || Sbjct 1735 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCAGAGCTCTCG 1794 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| ||||| || || || ||||| ||||| Sbjct 1795 ACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||| | |||| |||| |||||||| ||||| ||| | ||| Sbjct 1987 TTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATG 2046 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| || || || || | |||||| || || |||||| | |||| | | || Sbjct 2047 AGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCG 2106 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | || || || || || || | ||||| ||||| || || || ||| Sbjct 2107 ATGGTGTCGGACGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAG 2166 Query 27240 ATTTGCAT 27247 || ||||| Sbjct 2167 ATCTGCAT 2174 >seq193542 Length=1181 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | || || || || || || |||||||| Sbjct 149 TGCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 208 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || |||| |||||||| || ||||| | ||||| ||||| || || || | Sbjct 209 CCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGG 268 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| | | || | Sbjct 269 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGGACGACTCGA 328 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || ||||| ||||||||||| Sbjct 329 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423785991943776