Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq210976 129 7e-25 >seq210976 Length=3319 Score = 129 bits (142), Expect = 7e-25 Identities = 690/1090 (63%), Gaps = 22/1090 (2%) Strand=Plus/Minus Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686 |||||||| || || || ||| || | ||||||| |||||| | | || || Sbjct 1709 GACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCG 1650 Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746 || |||||| | | | ||||||||| || ||||| || |||||||| || || || Sbjct 1649 CCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTG 1590 Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806 |||| ||| || | ||| ||||| || ||||| || |||| | || ||| || ||| Sbjct 1589 CCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGA 1530 Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCT 110866 || | || |||| | ||| ||||||| | || | | | | Sbjct 1529 CCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCACCTGTCCGACGGCACGACG 1470 Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 |||| | ||| ||| ||| || | ||||||||| || ||||| |||| | ||| Sbjct 1469 CCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAG 1410 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTT 110983 | || | | | | || | || | ||| | |||||| |||| || ||||| Sbjct 1409 GTGCCCTCGACCTGCGCGAGCTC---GTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTC 1353 Query 110984 TCAAAGATACGAGCA-TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA 111042 || ||||| | || || | ||| ||| || || || | | || ||| | Sbjct 1352 TCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGAT 1294 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || || || || || || || || || || | || || || ||||| ||||| || || Sbjct 1293 CATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGA 1234 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || ||| ||||| || | || |||| || || ||| || || || Sbjct 1233 GTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 1177 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||| || | ||| || || || || || | | ||||| || || | | || Sbjct 1176 GGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTGGTCAAACTCGCC-GT-TGGTGAT- 1120 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || |||| || || |||| || |||| ||||| || ||| ||| || || Sbjct 1119 GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGT 1063 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | | || || || | ||| || || || || || | | || ||||| Sbjct 1062 GTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTT 1003 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| |||||| || |||||||| |||||||||||||| || ||||| |||| || Sbjct 1002 GGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGA 943 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 111459 | ||| || || ||| | || ||| || | | | || || |||||| Sbjct 942 CTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTG 883 Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||| ||| | || ||||||| ||| || |||| | || || || || Sbjct 882 CTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGC 823 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || || || ||||| | || || ||| || ||||||||||| ||||| Sbjct 822 CTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTC 763 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 |||||||||||| | |||||||| | || ||| || | || ||||| Sbjct 762 GGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CT 704 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || Sbjct 703 TCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAG 644 Query 111699 ATCCCTTTCG 111708 ||||| || Sbjct 643 CACCCTTGCG 634 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 412 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 353 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 352 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 293 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 292 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 233 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 232 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 173 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 112133 | ||| || || | || |||| |||| || |||||| ||| ||| |||| Sbjct 172 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 115 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| |||||||| Sbjct 114 TCTTGAAGCCAAAGTA 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626291189500800