Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq210976 167 3e-36 seq205955 107 2e-18 seq205954 107 2e-18 seq205953 107 2e-18 seq205952 107 2e-18 >seq210976 Length=3319 Score = 167 bits (184), Expect = 3e-36 Identities = 651/1010 (64%), Gaps = 24/1010 (2%) Strand=Plus/Plus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 634 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 693 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 694 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 753 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||| || || ||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 754 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 813 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || || |||| || || || | ||| | ||| ||||||| || | ||| Sbjct 814 CCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 873 Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892 |||||| | || || || ||| | ||| ||| | || ||| || ||||| Sbjct 874 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 929 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 || || ||| |||| || | |||||| || || || |||||||| ||||| |||||||| Sbjct 930 CGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 989 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| ||| || || || | | || ||| || || || || || || || Sbjct 990 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGA 1049 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 || | | | || || ||| ||| ||||| ||||| || || |||| || Sbjct 1050 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCT 1109 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 1110 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACCAGAAGCTGCACGACGTCGT 1163 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189 ||| |||||||| ||||| |||| || || || | || | |||||||| || Sbjct 1164 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 1223 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 | || || || || || ||| | ||| | || || || |||| || ||||| || || Sbjct 1224 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 1280 Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 1281 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 1340 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 ||| ||| || |||||||| || ||||||| || | || ||| | || ||| Sbjct 1341 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 1399 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427 | || || | || | |||| ||||| || || || || |||||| ||| || Sbjct 1400 TCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 1458 Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487 || | |||| | | | | | | ||||||| | ||| | |||| Sbjct 1459 GACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 1518 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | ||||| || ||| |||||| |||| || ||||| || ||||| ||| | Sbjct 1519 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 1578 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 1579 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 1628 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||||||||||||| | || ||| |||| | || Sbjct 165 CCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCCCCGCCGTG 224 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 225 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 284 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 285 AACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 344 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | |||| || | ||||| |||| ||| || Sbjct 345 TCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGC 404 Query 104462 GGTATTGG 104469 || || || Sbjct 405 GGCATCGG 412 >seq205955 Length=2194 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 716 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 657 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 656 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 598 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 597 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 538 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 537 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 478 Query 94938 ACTCCAC 94944 |||||| Sbjct 477 CCTCCAC 471 >seq205954 Length=2163 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 716 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 657 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 656 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 598 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 597 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 538 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 537 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 478 Query 94938 ACTCCAC 94944 |||||| Sbjct 477 CCTCCAC 471 >seq205953 Length=2829 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 656 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 715 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 716 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 774 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 775 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 834 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 835 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 894 Query 94938 ACTCCAC 94944 |||||| Sbjct 895 CCTCCAC 901 >seq205952 Length=2760 Score = 107 bits (118), Expect = 2e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| |||||| | || || || | | | | ||||| || || Sbjct 656 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGAC 715 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||||||||| | | | || |||| |||| || ||||| ||| ||| Sbjct 716 TGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTCGCCGAGCGTCTCGTCGG 774 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||| ||||||||||| || ||||||| | || | |||||||| Sbjct 775 ATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAA 834 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||| || |||||||| || ||| |||| |||||| | ||| || || ||||| Sbjct 835 GAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGG 894 Query 94938 ACTCCAC 94944 |||||| Sbjct 895 CCTCCAC 901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581644088551520